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    PBX4 PBX homeobox 4 [ Monodelphis domestica (gray short-tailed opossum) ]

    Gene ID: 100014180, updated on 8-May-2024

    Summary

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    Gene symbol
    PBX4
    Gene description
    PBX homeobox 4
    See related
    EnsemblRapid:ENSMODG00000004459
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Monodelphis domestica
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Metatheria; Didelphimorphia; Didelphidae; Monodelphis
    Orthologs
    human mouse all
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    Genomic context

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    See PBX4 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2023_05 current mMonDom1.pri (GCF_027887165.1) 3 NC_077229.1 (98698958..98790814)
    103 previous assembly MonDom5 (GCF_000002295.2) 3 NC_008803.1 (431661469..431753250)

    Chromosome 3 - NC_077229.1Genomic Context describing neighboring genes Neighboring gene ATPase 13A1 Neighboring gene coiled-coil-helix-coiled-coil-helix domain containing 5 Neighboring gene GEM interacting protein Neighboring gene lysophosphatidic acid receptor 2 Neighboring gene U6 spliceosomal RNA Neighboring gene nucleoredoxin like 1 Neighboring gene multivesicular body subunit 12A Neighboring gene solute carrier family 27 member 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in animal organ morphogenesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in brain development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in embryonic organ development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in eye development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in neuron development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    pre-B-cell leukemia transcription factor 4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_027887165.1-RS_2023_05

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference mMonDom1.pri

    Genomic

    1. NC_077229.1 Reference mMonDom1.pri

      Range
      98698958..98790814
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_007488594.3 → XP_007488656.1  pre-B-cell leukemia transcription factor 4 isoform X2

      UniProtKB/TrEMBL
      F6WGN9
      Conserved Domains (2) summary
      cd00086
      Location:161 → 222
      homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
      pfam03792
      Location:1 → 159
      PBC; PBC domain

    2. XM_007488593.3 → XP_007488655.1  pre-B-cell leukemia transcription factor 4 isoform X1

      UniProtKB/TrEMBL
      A0A5F8HE59, F6WGN9
      Related
      ENSMODP00000067064.1, ENSMODT00000101014.1
      Conserved Domains (2) summary
      cd00086
      Location:259 → 320
      homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
      pfam03792
      Location:67 → 257
      PBC; PBC domain
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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