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    RXRA retinoid X receptor alpha [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 722068, updated on 17-Aug-2024

    Summary

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    Official Symbol
    RXRAprovided by VGNC
    Official Full Name
    retinoid X receptor alphaprovided by VGNC
    Primary source
    VGNC:VGNC:76951
    See related
    Ensembl:ENSMMUG00000008183
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See RXRA in Genome Data Viewer
    Location:
    chromosome: 15
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 15 NC_041768.1 (3796466..3915792, complement)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 15 NC_027907.1 (3899857..3941166, complement)

    Chromosome 15 - NC_041768.1Genomic Context describing neighboring genes Neighboring gene ficolin-2-like Neighboring gene collagen type V alpha 1 chain Neighboring gene uncharacterized LOC114672696 Neighboring gene uncharacterized LOC106993577 Neighboring gene uncharacterized LOC106993576 Neighboring gene uncharacterized LOC114672621 Neighboring gene uncharacterized LOC114672697

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables nuclear receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables nuclear steroid receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables retinoic acid-responsive element binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in anatomical structure development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cell differentiation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in response to retinoic acid IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in retinoic acid receptor signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of RNA polymerase II transcription regulator complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    retinoic acid receptor RXR-alpha

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041768.1 Reference Mmul_10 Primary Assembly

      Range
      3796466..3915792 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_028834625.1 → XP_028690458.1  retinoic acid receptor RXR-alpha isoform X1

      UniProtKB/TrEMBL
      G7NF91, H9FY76
      Related
      ENSMMUP00000067893.1, ENSMMUT00000096282.1
      Conserved Domains (3) summary
      cd06943
      Location:229 → 440
      NR_LBD_RXR_like; The ligand binding domain of the retinoid X receptor and Ultraspiracle, members of nuclear receptor superfamily
      cd06956
      Location:133 → 209
      NR_DBD_RXR; DNA-binding domain of retinoid X receptor (RXR) is composed of two C4-type zinc fingers
      pfam11825
      Location:17 → 126
      Nuc_recep-AF1; Nuclear/hormone receptor activator site AF-1

    2. XM_028834626.1 → XP_028690459.1  retinoic acid receptor RXR-alpha isoform X2

      UniProtKB/TrEMBL
      G7NF91
      Related
      ENSMMUP00000070575.1, ENSMMUT00000100174.1
      Conserved Domains (3) summary
      cd06943
      Location:223 → 434
      NR_LBD_RXR_like; The ligand binding domain of the retinoid X receptor and Ultraspiracle, members of nuclear receptor superfamily
      cd06956
      Location:127 → 203
      NR_DBD_RXR; DNA-binding domain of retinoid X receptor (RXR) is composed of two C4-type zinc fingers
      pfam11825
      Location:11 → 120
      Nuc_recep-AF1; Nuclear/hormone receptor activator site AF-1
    Nucleotide Protein
    Heading Accession and Version

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