U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    RBPJL recombination signal binding protein for immunoglobulin kappa J region like [ Myotis lucifugus (little brown bat) ]

    Gene ID: 102428796, updated on 30-Mar-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    RBPJL
    Gene description
    recombination signal binding protein for immunoglobulin kappa J region like
    See related
    Ensembl:ENSMLUG00000005893
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Myotis lucifugus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Yangochiroptera; Vespertilionidae; Myotis
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See RBPJL in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    102 current Myoluc2.0 (GCF_000147115.1) Unplaced Scaffold NW_005871138.1 (3655004..3665276, complement)

    NW_005871138.1Genomic Context describing neighboring genes Neighboring gene protein FAM118B pseudogene Neighboring gene syndecan 4 Neighboring gene matrilin 4 Neighboring gene antileukoproteinase-like Neighboring gene uncharacterized LOC111826568

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NW_005871138 Unplaced Scaffold Reference Myoluc2.0

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription activator activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    LOW QUALITY PROTEIN: recombining binding protein suppressor of hairless-like protein

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Myotis lucifugus Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Myoluc2.0

    Genomic

    1. NW_005871138.1 Reference Myoluc2.0

      Range
      3655004..3665276 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_023756221.1 → XP_023611989.1  LOW QUALITY PROTEIN: recombining binding protein suppressor of hairless-like protein

      UniProtKB/TrEMBL
      G1P5T4
      Related
      ENSMLUP00000005391.2, ENSMLUT00000005899.2
      Conserved Domains (3) summary
      cd01176
      Location:375 → 471
      IPT_RBP-Jkappa; IPT domain of the recombination signal Jkappa binding protein (RBP-Jkappa). RBP-J kappa, was initially considered to be involved in V(D)J recombination because of its DNA binding specificity and structural similarity to site-specific recombinases known ...
      pfam09270
      Location:200 → 353
      BTD; Beta-trefoil DNA-binding domain
      pfam09271
      Location:62 → 198
      LAG1-DNAbind; LAG1, DNA binding
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.