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    LOC105871782 zinc finger and SCAN domain-containing protein 20 [ Microcebus murinus (gray mouse lemur) ]

    Gene ID: 105871782, updated on 9-Nov-2023

    Summary

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    Gene symbol
    LOC105871782
    Gene description
    zinc finger and SCAN domain-containing protein 20
    See related
    Ensembl:ENSMICG00000008314
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Microcebus murinus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Strepsirrhini; Lemuriformes; Cheirogaleidae; Microcebus
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    101 current Mmur_3.0 (GCF_000165445.2) 2 NC_033661.1 (31595292..31632245)
    100 previous assembly Mmur_2.0 (GCF_000165445.1) Unplaced Scaffold NW_012195908.1 (2819408..2856381, complement)

    Chromosome 2 - NC_033661.1Genomic Context describing neighboring genes Neighboring gene alpha 1,3-galactosyltransferase 2 Neighboring gene polyhomeotic homolog 2 Neighboring gene zinc finger and SCAN domain-containing protein 20-like Neighboring gene CUB and Sushi multiple domains 2 Neighboring gene uncharacterized LOC105871778 Neighboring gene uncharacterized LOC105871779 Neighboring gene high mobility group box 4

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    zinc finger and SCAN domain-containing protein 20

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Microcebus murinus Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmur_3.0 Primary Assembly

    Genomic

    1. NC_033661.1 Reference Mmur_3.0 Primary Assembly

      Range
      31595292..31632245
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_012765322.1 → XP_012620776.1  zinc finger and SCAN domain-containing protein 20 isoform X1

      See identical proteins and their annotated locations for XP_012620776.1

      UniProtKB/TrEMBL
      A0A8B7GDN6, A0A8C5UU21
      Related
      ENSMICP00000007571.3, ENSMICT00000008312.3
      Conserved Domains (6) summary
      COG5048
      Location:708 → 1050
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:970 → 990
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:968 → 990
      zf-C2H2; Zinc finger, C2H2 type
      pfam02023
      Location:47 → 132
      SCAN; SCAN domain
      pfam13465
      Location:982 → 1007
      zf-H2C2_2; Zinc-finger double domain
      pfam13837
      Location:486 → 567
      Myb_DNA-bind_4; Myb/SANT-like DNA-binding domain

    2. XM_012765320.2 → XP_012620774.1  zinc finger and SCAN domain-containing protein 20 isoform X1

      See identical proteins and their annotated locations for XP_012620774.1

      UniProtKB/TrEMBL
      A0A8B7GDN6, A0A8C5UU21
      Conserved Domains (6) summary
      COG5048
      Location:708 → 1050
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:970 → 990
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:968 → 990
      zf-C2H2; Zinc finger, C2H2 type
      pfam02023
      Location:47 → 132
      SCAN; SCAN domain
      pfam13465
      Location:982 → 1007
      zf-H2C2_2; Zinc-finger double domain
      pfam13837
      Location:486 → 567
      Myb_DNA-bind_4; Myb/SANT-like DNA-binding domain

    3. XM_012765319.1 → XP_012620773.1  zinc finger and SCAN domain-containing protein 20 isoform X1

      See identical proteins and their annotated locations for XP_012620773.1

      UniProtKB/TrEMBL
      A0A8B7GDN6, A0A8C5UU21
      Conserved Domains (6) summary
      COG5048
      Location:708 → 1050
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:970 → 990
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:968 → 990
      zf-C2H2; Zinc finger, C2H2 type
      pfam02023
      Location:47 → 132
      SCAN; SCAN domain
      pfam13465
      Location:982 → 1007
      zf-H2C2_2; Zinc-finger double domain
      pfam13837
      Location:486 → 567
      Myb_DNA-bind_4; Myb/SANT-like DNA-binding domain

    4. XM_012765323.1 → XP_012620777.1  zinc finger and SCAN domain-containing protein 20 isoform X2

      UniProtKB/TrEMBL
      A0A8B7GEE2, A0A8C5UU21
      Conserved Domains (6) summary
      COG5048
      Location:707 → 1049
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:969 → 989
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:967 → 989
      zf-C2H2; Zinc finger, C2H2 type
      pfam02023
      Location:47 → 132
      SCAN; SCAN domain
      pfam13465
      Location:981 → 1006
      zf-H2C2_2; Zinc-finger double domain
      pfam13837
      Location:485 → 566
      Myb_DNA-bind_4; Myb/SANT-like DNA-binding domain

    5. XM_012765321.1 → XP_012620775.1  zinc finger and SCAN domain-containing protein 20 isoform X1

      See identical proteins and their annotated locations for XP_012620775.1

      UniProtKB/TrEMBL
      A0A8B7GDN6, A0A8C5UU21
      Conserved Domains (6) summary
      COG5048
      Location:708 → 1050
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:970 → 990
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:968 → 990
      zf-C2H2; Zinc finger, C2H2 type
      pfam02023
      Location:47 → 132
      SCAN; SCAN domain
      pfam13465
      Location:982 → 1007
      zf-H2C2_2; Zinc-finger double domain
      pfam13837
      Location:486 → 567
      Myb_DNA-bind_4; Myb/SANT-like DNA-binding domain
    Nucleotide Protein
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