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    GATA3 GATA binding protein 3 [ Microcebus murinus (gray mouse lemur) ]

    Gene ID: 105858249, updated on 13-Mar-2024

    Summary

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    Gene symbol
    GATA3
    Gene description
    GATA binding protein 3
    See related
    Ensembl:ENSMICG00000008284
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Microcebus murinus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Strepsirrhini; Lemuriformes; Cheirogaleidae; Microcebus
    Orthologs
    human mouse all
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    Genomic context

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    See GATA3 in Genome Data Viewer
    Location:
    chromosome: 25
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    101 current Mmur_3.0 (GCF_000165445.2) 25 NC_033684.1 (24487768..24510820, complement)
    100 previous assembly Mmur_2.0 (GCF_000165445.1) Unplaced Scaffold NW_012200019.1 (1637368..1660394, complement)

    Chromosome 25 - NC_033684.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105858252 Neighboring gene 40S ribosomal protein S29 pseudogene Neighboring gene TATA-box binding protein associated factor 3 Neighboring gene uncharacterized LOC105858235

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cell fate commitment IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in embryonic organ development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in immune system development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of epithelial cell differentiation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    trans-acting T-cell-specific transcription factor GATA-3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Microcebus murinus Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmur_3.0 Primary Assembly

    Genomic

    1. NC_033684.1 Reference Mmur_3.0 Primary Assembly

      Range
      24487768..24510820 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_020284160.1 → XP_020139749.1  trans-acting T-cell-specific transcription factor GATA-3 isoform X1

      UniProtKB/TrEMBL
      A0A8C5W804
      Related
      ENSMICP00000045380.1, ENSMICT00000058702.1
      Conserved Domains (2) summary
      cd00202
      Location:317 → 367
      ZnF_GATA; Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C
      cl27975
      Location:74 → 261
      EBV-NA3; Epstein-Barr virus nuclear antigen 3 (EBNA-3)

    2. XM_020284161.1 → XP_020139750.1  trans-acting T-cell-specific transcription factor GATA-3 isoform X3

      UniProtKB/TrEMBL
      A0A8B7WY78
      Conserved Domains (3) summary
      smart00401
      Location:313 → 351
      ZnF_GATA; zinc finger binding to DNA consensus sequence [AT]GATA[AG]
      cd00202
      Location:263 → 313
      ZnF_GATA; Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C
      cl27975
      Location:74 → 261
      EBV-NA3; Epstein-Barr virus nuclear antigen 3 (EBNA-3)

    3. XM_012741258.2 → XP_012596712.2  trans-acting T-cell-specific transcription factor GATA-3 isoform X2

      UniProtKB/TrEMBL
      A0A8B7ER69
      Conserved Domains (2) summary
      cd00202
      Location:316 → 366
      ZnF_GATA; Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C
      cl27975
      Location:74 → 244
      EBV-NA3; Epstein-Barr virus nuclear antigen 3 (EBNA-3)

    4. XM_012741257.2 → XP_012596711.2  trans-acting T-cell-specific transcription factor GATA-3 isoform X1

      UniProtKB/TrEMBL
      A0A8C5W804
      Related
      ENSMICP00000035654.2, ENSMICT00000039865.2
      Conserved Domains (2) summary
      cd00202
      Location:317 → 367
      ZnF_GATA; Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C
      cl27975
      Location:74 → 261
      EBV-NA3; Epstein-Barr virus nuclear antigen 3 (EBNA-3)
    Nucleotide Protein
    Heading Accession and Version

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