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    RXRB retinoid X receptor beta [ Microcebus murinus (gray mouse lemur) ]

    Gene ID: 105885999, updated on 13-Mar-2024

    Summary

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    Gene symbol
    RXRB
    Gene description
    retinoid X receptor beta
    See related
    Ensembl:ENSMICG00000000899
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Microcebus murinus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Strepsirrhini; Lemuriformes; Cheirogaleidae; Microcebus
    Orthologs
    human mouse all
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    Genomic context

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    See RXRB in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    101 current Mmur_3.0 (GCF_000165445.2) 6 NC_033665.1 (3159863..3166648, complement)
    100 previous assembly Mmur_2.0 (GCF_000165445.1) Unplaced Scaffold NW_012198786.1 (313411..320196)

    Chromosome 6 - NC_033665.1Genomic Context describing neighboring genes Neighboring gene collagen type XI alpha 2 chain Neighboring gene uncharacterized LOC105886016 Neighboring gene uncharacterized LOC105886017 Neighboring gene solute carrier family 39 member 7 Neighboring gene hydroxysteroid 17-beta dehydrogenase 8

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables nuclear receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables nuclear steroid receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables retinoic acid-responsive element binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in anatomical structure development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cell differentiation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in response to retinoic acid IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in retinoic acid receptor signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of RNA polymerase II transcription regulator complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    retinoic acid receptor RXR-beta

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Microcebus murinus Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmur_3.0 Primary Assembly

    Genomic

    1. NC_033665.1 Reference Mmur_3.0 Primary Assembly

      Range
      3159863..3166648 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_012791358.1 → XP_012646812.1  retinoic acid receptor RXR-beta isoform X2

      UniProtKB/TrEMBL
      A0A8B7IAG3, A0A8C5UJ34
      Conserved Domains (3) summary
      cd06943
      Location:296 → 509
      NR_LBD_RXR_like; The ligand binding domain of the retinoid X receptor and Ultraspiracle, members of nuclear receptor superfamily
      cd06956
      Location:202 → 277
      NR_DBD_RXR; DNA-binding domain of retinoid X receptor (RXR) is composed of two C4-type zinc fingers
      pfam11825
      Location:133 → 187
      Nuc_recep-AF1; Nuclear/hormone receptor activator site AF-1

    2. XM_012791357.1 → XP_012646811.1  retinoic acid receptor RXR-beta isoform X1

      UniProtKB/TrEMBL
      A0A8C5UJ34, A0A8C5VJL2
      Related
      ENSMICP00000024495.2, ENSMICT00000048197.2
      Conserved Domains (3) summary
      cd06943
      Location:296 → 513
      NR_LBD_RXR_like; The ligand binding domain of the retinoid X receptor and Ultraspiracle, members of nuclear receptor superfamily
      cd06956
      Location:202 → 277
      NR_DBD_RXR; DNA-binding domain of retinoid X receptor (RXR) is composed of two C4-type zinc fingers
      pfam11825
      Location:133 → 187
      Nuc_recep-AF1; Nuclear/hormone receptor activator site AF-1

    3. XM_012791359.2 → XP_012646813.1  retinoic acid receptor RXR-beta isoform X3

      UniProtKB/TrEMBL
      A0A8B7I959
      Conserved Domains (2) summary
      cd06943
      Location:200 → 417
      NR_LBD_RXR_like; The ligand binding domain of the retinoid X receptor and Ultraspiracle, members of nuclear receptor superfamily
      cd06956
      Location:106 → 181
      NR_DBD_RXR; DNA-binding domain of retinoid X receptor (RXR) is composed of two C4-type zinc fingers

    4. XM_020286941.1 → XP_020142530.1  retinoic acid receptor RXR-beta isoform X5

      UniProtKB/TrEMBL
      A0A8B7X5X4
      Conserved Domains (2) summary
      cd06943
      Location:150 → 367
      NR_LBD_RXR_like; The ligand binding domain of the retinoid X receptor and Ultraspiracle, members of nuclear receptor superfamily
      cd06956
      Location:56 → 131
      NR_DBD_RXR; DNA-binding domain of retinoid X receptor (RXR) is composed of two C4-type zinc fingers

    5. XM_012791360.2 → XP_012646814.1  retinoic acid receptor RXR-beta isoform X4

      UniProtKB/TrEMBL
      A0A8B7I745
      Conserved Domains (2) summary
      cd06943
      Location:200 → 413
      NR_LBD_RXR_like; The ligand binding domain of the retinoid X receptor and Ultraspiracle, members of nuclear receptor superfamily
      cd06956
      Location:106 → 181
      NR_DBD_RXR; DNA-binding domain of retinoid X receptor (RXR) is composed of two C4-type zinc fingers
    Nucleotide Protein
    Heading Accession and Version

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