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    ZSCAN20 zinc finger and SCAN domain containing 20 [ Loxodonta africana (African savanna elephant) ]

    Gene ID: 100671678, updated on 11-Apr-2024

    Summary

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    Gene symbol
    ZSCAN20
    Gene description
    zinc finger and SCAN domain containing 20
    See related
    EnsemblRapid:ENSLAFG00000022272
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Loxodonta africana
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Afrotheria; Proboscidea; Elephantidae; Loxodonta
    Orthologs
    human mouse all
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    Genomic context

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    See ZSCAN20 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_04 current mLoxAfr1.hap2 (GCF_030014295.1) 3 NC_087344.1 (69115713..69150916)
    102 previous assembly Loxafr3.0 (GCF_000001905.1) Unplaced Scaffold NW_003573454.1 (12019476..12048837)

    Chromosome 3 - NC_087344.1Genomic Context describing neighboring genes Neighboring gene toll-like receptor 12 Neighboring gene U6 spliceosomal RNA Neighboring gene CUB and Sushi multiple domains 2 Neighboring gene 60 kDa heat shock protein, mitochondrial-like Neighboring gene high mobility group box 4

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    zinc finger and SCAN domain-containing protein 20

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_030014295.1-RS_2024_04

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference mLoxAfr1.hap2

    Genomic

    1. NC_087344.1 Reference mLoxAfr1.hap2

      Range
      69115713..69150916
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_023554503.2 → XP_023410271.1  zinc finger and SCAN domain-containing protein 20 isoform X2

      UniProtKB/TrEMBL
      G3TQC9
      Conserved Domains (5) summary
      smart00431
      Location:47 → 139
      SCAN; leucine rich region
      COG5048
      Location:703 → 1049
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:744 → 764
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13837
      Location:485 → 566
      Myb_DNA-bind_4; Myb/SANT-like DNA-binding domain
      cl02581
      Location:225 → 274
      KRAB_A-box; KRAB (Kruppel-associated box) domain -A box

    2. XM_003415479.4 → XP_003415527.1  zinc finger and SCAN domain-containing protein 20 isoform X1

      UniProtKB/TrEMBL
      G3TQC9
      Conserved Domains (5) summary
      smart00431
      Location:47 → 139
      SCAN; leucine rich region
      COG5048
      Location:704 → 1041
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:745 → 765
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13837
      Location:486 → 567
      Myb_DNA-bind_4; Myb/SANT-like DNA-binding domain
      cl02581
      Location:225 → 274
      KRAB_A-box; KRAB (Kruppel-associated box) domain -A box

    3. XM_023554501.2 → XP_023410269.1  zinc finger and SCAN domain-containing protein 20 isoform X1

      UniProtKB/TrEMBL
      G3TQC9
      Conserved Domains (5) summary
      smart00431
      Location:47 → 139
      SCAN; leucine rich region
      COG5048
      Location:704 → 1041
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:745 → 765
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13837
      Location:486 → 567
      Myb_DNA-bind_4; Myb/SANT-like DNA-binding domain
      cl02581
      Location:225 → 274
      KRAB_A-box; KRAB (Kruppel-associated box) domain -A box

    4. XM_023554500.2 → XP_023410268.1  zinc finger and SCAN domain-containing protein 20 isoform X1

      UniProtKB/TrEMBL
      G3TQC9
      Related
      ENSLAFP00000040929.1, ENSLAFT00000044286.1
      Conserved Domains (5) summary
      smart00431
      Location:47 → 139
      SCAN; leucine rich region
      COG5048
      Location:704 → 1041
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:745 → 765
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13837
      Location:486 → 567
      Myb_DNA-bind_4; Myb/SANT-like DNA-binding domain
      cl02581
      Location:225 → 274
      KRAB_A-box; KRAB (Kruppel-associated box) domain -A box

    5. XM_023554502.2 → XP_023410270.1  zinc finger and SCAN domain-containing protein 20 isoform X1

      UniProtKB/TrEMBL
      G3TQC9
      Conserved Domains (5) summary
      smart00431
      Location:47 → 139
      SCAN; leucine rich region
      COG5048
      Location:704 → 1041
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:745 → 765
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13837
      Location:486 → 567
      Myb_DNA-bind_4; Myb/SANT-like DNA-binding domain
      cl02581
      Location:225 → 274
      KRAB_A-box; KRAB (Kruppel-associated box) domain -A box

    6. XM_023554505.2 → XP_023410273.1  zinc finger and SCAN domain-containing protein 20 isoform X3

      UniProtKB/TrEMBL
      G3TQC9
      Conserved Domains (5) summary
      smart00431
      Location:47 → 139
      SCAN; leucine rich region
      COG5048
      Location:561 → 907
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:602 → 622
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13837
      Location:343 → 424
      Myb_DNA-bind_4; Myb/SANT-like DNA-binding domain
      cl02581
      Location:225 → 274
      KRAB_A-box; KRAB (Kruppel-associated box) domain -A box

    7. XM_023554506.2 → XP_023410274.1  zinc finger and SCAN domain-containing protein 20 isoform X4

      UniProtKB/TrEMBL
      G3TQC9
      Conserved Domains (5) summary
      smart00431
      Location:47 → 139
      SCAN; leucine rich region
      COG5048
      Location:560 → 906
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:601 → 621
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13837
      Location:342 → 423
      Myb_DNA-bind_4; Myb/SANT-like DNA-binding domain
      cl02581
      Location:225 → 274
      KRAB_A-box; KRAB (Kruppel-associated box) domain -A box
    Nucleotide Protein
    Heading Accession and Version

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