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    SUPT20H SPT20 homolog, SAGA complex component [ Loxodonta africana (African savanna elephant) ]

    Gene ID: 100657731, updated on 11-Apr-2024

    Summary

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    Gene symbol
    SUPT20H
    Gene description
    SPT20 homolog, SAGA complex component
    See related
    EnsemblRapid:ENSLAFG00000014250
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Loxodonta africana
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Afrotheria; Proboscidea; Elephantidae; Loxodonta
    Orthologs
    human mouse all
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    Genomic context

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    See SUPT20H in Genome Data Viewer
    Location:
    chromosome: 17
    Exon count:
    32
    Annotation release Status Assembly Chr Location
    RS_2024_04 current mLoxAfr1.hap2 (GCF_030014295.1) 17 NC_087358.1 (81274359..81329918)
    102 previous assembly Loxafr3.0 (GCF_000001905.1) Unplaced Scaffold NW_003573443.1 (41657577..41707380)

    Chromosome 17 - NC_087358.1Genomic Context describing neighboring genes Neighboring gene transient receptor potential cation channel subfamily C member 4 Neighboring gene periostin Neighboring gene uncharacterized LOC135227999 Neighboring gene exosome component 8 Neighboring gene ALG5 dolichyl-phosphate beta-glucosyltransferase Neighboring gene SMAD family member 9

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables transcription coregulator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of SAGA complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcription factor SPT20 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_030014295.1-RS_2024_04

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference mLoxAfr1.hap2

    Genomic

    1. NC_087358.1 Reference mLoxAfr1.hap2

      Range
      81274359..81329918
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_064270219.1 → XP_064126289.1  transcription factor SPT20 homolog isoform X8

    2. XM_064270226.1 → XP_064126296.1  transcription factor SPT20 homolog isoform X13

    3. XM_064270231.1 → XP_064126301.1  transcription factor SPT20 homolog isoform X16

    4. XM_064270241.1 → XP_064126311.1  transcription factor SPT20 homolog isoform X22

    5. XM_064270218.1 → XP_064126288.1  transcription factor SPT20 homolog isoform X8

    6. XM_064270223.1 → XP_064126293.1  transcription factor SPT20 homolog isoform X11

    7. XM_064270229.1 → XP_064126299.1  transcription factor SPT20 homolog isoform X15

    8. XM_064270233.1 → XP_064126303.1  transcription factor SPT20 homolog isoform X17

    9. XM_064270238.1 → XP_064126308.1  transcription factor SPT20 homolog isoform X22

    10. XM_064270225.1 → XP_064126295.1  transcription factor SPT20 homolog isoform X13

      Related
      ENSLAFP00000011936.4, ENSLAFT00000014253.4

    11. XM_064270230.1 → XP_064126300.1  transcription factor SPT20 homolog isoform X16

    12. XM_064270240.1 → XP_064126310.1  transcription factor SPT20 homolog isoform X22

    13. XM_064270239.1 → XP_064126309.1  transcription factor SPT20 homolog isoform X22

    14. XM_064270220.1 → XP_064126290.1  transcription factor SPT20 homolog isoform X8

    15. XM_064270227.1 → XP_064126297.1  transcription factor SPT20 homolog isoform X13

      Related
      ENSLAFP00000020525.2, ENSLAFT00000035253.2

    16. XM_064270232.1 → XP_064126302.1  transcription factor SPT20 homolog isoform X16

    17. XM_064270228.1 → XP_064126298.1  transcription factor SPT20 homolog isoform X14

    18. XM_064270211.1 → XP_064126281.1  transcription factor SPT20 homolog isoform X1

    19. XM_064270213.1 → XP_064126283.1  transcription factor SPT20 homolog isoform X3

    20. XM_064270234.1 → XP_064126304.1  transcription factor SPT20 homolog isoform X18

    21. XM_064270214.1 → XP_064126284.1  transcription factor SPT20 homolog isoform X4

    22. XM_064270212.1 → XP_064126282.1  transcription factor SPT20 homolog isoform X2

    23. XM_064270216.1 → XP_064126286.1  transcription factor SPT20 homolog isoform X6

    24. XM_064270221.1 → XP_064126291.1  transcription factor SPT20 homolog isoform X9

    25. XM_064270215.1 → XP_064126285.1  transcription factor SPT20 homolog isoform X5

    26. XM_064270217.1 → XP_064126287.1  transcription factor SPT20 homolog isoform X7

    27. XM_064270222.1 → XP_064126292.1  transcription factor SPT20 homolog isoform X10

    28. XM_064270224.1 → XP_064126294.1  transcription factor SPT20 homolog isoform X12

    29. XM_064270235.1 → XP_064126305.1  transcription factor SPT20 homolog isoform X19

    30. XM_064270237.1 → XP_064126307.1  transcription factor SPT20 homolog isoform X21

    31. XM_064270244.1 → XP_064126314.1  transcription factor SPT20 homolog isoform X25

    32. XM_064270236.1 → XP_064126306.1  transcription factor SPT20 homolog isoform X20

    33. XM_064270243.1 → XP_064126313.1  transcription factor SPT20 homolog isoform X24

    34. XM_064270242.1 → XP_064126312.1  transcription factor SPT20 homolog isoform X23

    RNA

    1. XR_010318226.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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