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    LOC102353201 MHC class II regulatory factor RFX1 [ Latimeria chalumnae (coelacanth) ]

    Gene ID: 102353201, updated on 26-Apr-2024

    Summary

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    Gene symbol
    LOC102353201
    Gene description
    MHC class II regulatory factor RFX1
    See related
    Ensembl:ENSLACG00000022433 Ensembl:ENSLACG00000022668
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Latimeria chalumnae
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Coelacanthiformes; Coelacanthidae; Latimeria
    Also known as
    RFX1
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    Genomic context

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    See LOC102353201 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    22
    Annotation release Status Assembly Chr Location
    RS_2024_04 current fLatCha1.pri (GCF_037176945.1) 6 NC_088144.1 (132195287..132283379, complement)
    101 previous assembly LatCha1 (GCF_000225785.1) Unplaced Scaffold NW_005819207.1 (1046761..1096209, complement)

    Chromosome 6 - NC_088144.1Genomic Context describing neighboring genes Neighboring gene podocan-like Neighboring gene DDB1 and CUL4 associated factor 15 Neighboring gene RAD23 homolog A, nucleotide excision repair protein a Neighboring gene tetratricopeptide repeat protein 39A

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    MHC class II regulatory factor RFX1
    Names
    regulatory factor X1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_037176945.1-RS_2024_04

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference fLatCha1.pri

    Genomic

    1. NC_088144.1 Reference fLatCha1.pri

      Range
      132195287..132283379 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_064560715.1 → XP_064416785.1  MHC class II regulatory factor RFX1

    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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