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    arid2 AT rich interactive domain 2 (ARID, RFX-like) [ Gadus morhua (Atlantic cod) ]

    Gene ID: 115541873, updated on 17-Mar-2024

    Summary

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    Gene symbol
    arid2
    Gene description
    AT rich interactive domain 2 (ARID, RFX-like)
    See related
    Ensembl:ENSGMOG00000016013
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gadus morhua
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Zeiogadaria; Gadariae; Gadiformes; Gadoidei; Gadidae; Gadus
    Orthologs
    human zebrafish all
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    Genomic context

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    See arid2 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    21
    Annotation release Status Assembly Chr Location
    100 current gadMor3.0 (GCF_902167405.1) 4 NC_044051.1 (6929819..6957896, complement)

    Chromosome 4 - NC_044051.1Genomic Context describing neighboring genes Neighboring gene proline-rich extensin-like protein EPR1 Neighboring gene zinc finger protein 467-like Neighboring gene growth arrest-specific 2 like 3 Neighboring gene transmembrane 7 superfamily member 3

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_044051.1 Chromosome 4 Reference gadMor3.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of SWI/SNF superfamily-type complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    AT-rich interactive domain-containing protein 2
    Names
    AT-rich interaction domain 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Gadus morhua Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference gadMor3.0 Primary Assembly

    Genomic

    1. NC_044051.1 Reference gadMor3.0 Primary Assembly

      Range
      6929819..6957896 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030353776.1 → XP_030209636.1  AT-rich interactive domain-containing protein 2

      UniProtKB/TrEMBL
      A0A8C5A7W5
      Related
      ENSGMOP00000028230.1, ENSGMOT00000030648.1
      Conserved Domains (2) summary
      cd16866
      Location:15 → 102
      ARID_ARID2; ARID/BRIGHT DNA binding domain of AT-rich interactive domain-containing protein 2 (ARID2) and similar proteins
      pfam02257
      Location:520 → 581
      RFX_DNA_binding; RFX DNA-binding domain
    Nucleotide Protein
    Heading Accession and Version

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