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    cdc5l CDC5 cell division cycle 5-like (S. pombe) [ Gadus morhua (Atlantic cod) ]

    Gene ID: 115559973, updated on 17-Mar-2024

    Summary

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    Gene symbol
    cdc5l
    Gene description
    CDC5 cell division cycle 5-like (S. pombe)
    See related
    Ensembl:ENSGMOG00000000407
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gadus morhua
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Zeiogadaria; Gadariae; Gadiformes; Gadoidei; Gadidae; Gadus
    Orthologs
    human zebrafish all
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    Genomic context

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    See cdc5l in Genome Data Viewer
    Location:
    chromosome: 15
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    100 current gadMor3.0 (GCF_902167405.1) 15 NC_044062.1 (24983769..25009461, complement)

    Chromosome 15 - NC_044062.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC115559509 Neighboring gene uncharacterized LOC115559508 Neighboring gene runt-related transcription factor 3-like Neighboring gene SPT3 homolog, SAGA and STAGA complex component Neighboring gene 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-1-like Neighboring gene N-ethylmaleimide-sensitive factor attachment protein, beta a

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_044062.1 Chromosome 15 Reference gadMor3.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of Prp19 complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of spliceosomal complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    cell division cycle 5-like protein
    Names
    cell division cycle 5 like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Gadus morhua Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference gadMor3.0 Primary Assembly

    Genomic

    1. NC_044062.1 Reference gadMor3.0 Primary Assembly

      Range
      24983769..25009461 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030379223.1 → XP_030235083.1  cell division cycle 5-like protein

      UniProtKB/TrEMBL
      A0A8C5A7I0
      Related
      ENSGMOP00000056454.1, ENSGMOT00000040972.1
      Conserved Domains (2) summary
      COG5147
      Location:6 → 258
      REB1; Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]
      pfam11831
      Location:403 → 662
      Myb_Cef; pre-mRNA splicing factor component
    Nucleotide Protein
    Heading Accession and Version

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