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    PAX4 paired box 4 [ Gorilla gorilla gorilla (western lowland gorilla) ]

    Gene ID: 101128491, updated on 1-Oct-2024

    Summary

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    Gene symbol
    PAX4
    Gene description
    paired box 4
    See related
    Ensembl:ENSGGOG00000002555
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gorilla gorilla gorilla (sub-species: gorilla)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Gorilla
    Orthologs
    human mouse all
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    Genomic context

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    See PAX4 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_02 current NHGRI_mGorGor1-v2.0_pri (GCF_029281585.2) 6 NC_073230.2 (136688909..136696597, complement)
    RS_2023_04 previous assembly NHGRI_mGorGor1-v1.1-0.2.freeze_pri (GCF_029281585.1) 7 NC_073231.1 (136698561..136706249, complement)

    Chromosome 6 - NC_073230.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC129534619 Neighboring gene fascin actin-bundling protein 3 Neighboring gene ARF GTPase 5 Neighboring gene staphylococcal nuclease and tudor domain containing 1 Neighboring gene leucine rich repeat containing 4 Neighboring gene uncharacterized LOC129534623

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in anatomical structure development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    paired box protein Pax-4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_029281585.2-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference NHGRI_mGorGor1-v2.0_pri Primary Assembly

    Genomic

    1. NC_073230.2 Reference NHGRI_mGorGor1-v2.0_pri Primary Assembly

      Range
      136688909..136696597 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_004046156.4 → XP_004046204.2  paired box protein Pax-4 isoform X1

      UniProtKB/TrEMBL
      G3QJC4, G3RZS5
      Conserved Domains (2) summary
      smart00351
      Location:5 → 129
      PAX; Paired Box domain
      pfam00046
      Location:174 → 227
      Homeobox; Homeobox domain

    2. XM_019031345.3 → XP_018886890.1  paired box protein Pax-4 isoform X2

      UniProtKB/TrEMBL
      G3RZS5
      Conserved Domains (2) summary
      smart00351
      Location:5 → 129
      PAX; Paired Box domain
      pfam00046
      Location:174 → 227
      Homeobox; Homeobox domain
    Nucleotide Protein
    Heading Accession and Version

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