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    emx3 empty spiracles homeobox 3 [ Gasterosteus aculeatus (three-spined stickleback) ]

    Gene ID: 120818291, updated on 18-Jun-2024

    Summary

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    Gene symbol
    emx3
    Gene description
    empty spiracles homeobox 3
    See related
    Ensembl:ENSGACG00000016370
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gasterosteus aculeatus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Cottioidei; Gasterosteales; Gasterosteidae; Gasterosteus
    Orthologs
    zebrafish all
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    Genomic context

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    See emx3 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    100 current GAculeatus_UGA_version5 (GCF_016920845.1) 4 NC_053215.1 (867591..876659, complement)

    Chromosome 4 - NC_053215.1Genomic Context describing neighboring genes Neighboring gene transmembrane p24 trafficking protein 9 Neighboring gene xylosylprotein beta 1,4-galactosyltransferase, polypeptide 7 (galactosyltransferase I) Neighboring gene coiled-coil domain containing 69 Neighboring gene uncharacterized LOC120816917

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_053215.1 Chromosome 4 Reference GAculeatus_UGA_version5 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in brain development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in central nervous system development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in neuron differentiation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    LOW QUALITY PROTEIN: empty spiracles homeobox 3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Gasterosteus aculeatus Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GAculeatus_UGA_version5 Primary Assembly

    Genomic

    1. NC_053215.1 Reference GAculeatus_UGA_version5 Primary Assembly

      Range
      867591..876659 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040175247.1 → XP_040031181.1  LOW QUALITY PROTEIN: empty spiracles homeobox 3

      UniProtKB/TrEMBL
      G3PVH3
      Related
      ENSGACP00000021610.2, ENSGACT00000021651.2
      Conserved Domains (1) summary
      cd00086
      Location:148 → 206
      homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
    Nucleotide Protein Strain
    Heading Accession and Version

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