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    LOC120829213 paired box protein Pax-7-like [ Gasterosteus aculeatus (three-spined stickleback) ]

    Gene ID: 120829213, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC120829213
    Gene description
    paired box protein Pax-7-like
    See related
    Ensembl:ENSGACG00000012890
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gasterosteus aculeatus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Cottioidei; Gasterosteales; Gasterosteidae; Gasterosteus
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    Genomic context

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    See LOC120829213 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    100 current GAculeatus_UGA_version5 (GCF_016920845.1) 12 NC_053223.1 (18869611..18920007, complement)

    Chromosome 12 - NC_053223.1Genomic Context describing neighboring genes Neighboring gene voltage-gated potassium channel subunit beta-2-like Neighboring gene death effector domain containing Neighboring gene mitofusin 2 Neighboring gene zinc finger protein PLAGL2-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_053223.1 Chromosome 12 Reference GAculeatus_UGA_version5 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in anatomical structure development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    paired box protein Pax-7-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Gasterosteus aculeatus Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GAculeatus_UGA_version5 Primary Assembly

    Genomic

    1. NC_053223.1 Reference GAculeatus_UGA_version5 Primary Assembly

      Range
      18869611..18920007 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040193161.1 → XP_040049095.1  paired box protein Pax-7-like isoform X4

      UniProtKB/TrEMBL
      A0AAQ4PT72
      Conserved Domains (2) summary
      smart00389
      Location:214 → 270
      HOX; Homeodomain
      cd00131
      Location:34 → 160
      PAX; Paired Box domain

    2. XM_040193159.1 → XP_040049093.1  paired box protein Pax-7-like isoform X2

      UniProtKB/TrEMBL
      A0AAQ4PT72
      Conserved Domains (2) summary
      cd00086
      Location:220 → 277
      homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
      cd00131
      Location:34 → 165
      PAX; Paired Box domain

    3. XM_040193160.1 → XP_040049094.1  paired box protein Pax-7-like isoform X3

      UniProtKB/TrEMBL
      A0AAQ4PT72
      Related
      ENSGACP00000062952.1, ENSGACT00000085305.1
      Conserved Domains (2) summary
      smart00389
      Location:215 → 271
      HOX; Homeodomain
      cd00131
      Location:34 → 161
      PAX; Paired Box domain

    4. XM_040193158.1 → XP_040049092.1  paired box protein Pax-7-like isoform X1

      UniProtKB/TrEMBL
      A0AAQ4PT72
      Related
      ENSGACP00000041942.1, ENSGACT00000053112.1
      Conserved Domains (2) summary
      smart00389
      Location:220 → 276
      HOX; Homeodomain
      cd00131
      Location:34 → 166
      PAX; Paired Box domain
    Nucleotide Protein Strain
    Heading Accession and Version

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