U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    nr4a3 nuclear receptor subfamily 4, group A, member 3 [ Gasterosteus aculeatus (three-spined stickleback) ]

    Gene ID: 120810712, updated on 10-Oct-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    nr4a3
    Gene description
    nuclear receptor subfamily 4, group A, member 3
    See related
    Ensembl:ENSGACG00000009027
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gasterosteus aculeatus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Cottioidei; Gasterosteales; Gasterosteidae; Gasterosteus
    Orthologs
    human zebrafish all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See nr4a3 in Genome Data Viewer
    Location:
    chromosome: 20
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    100 current GAculeatus_UGA_version5 (GCF_016920845.1) 20 NC_053231.1 (8891354..8911085, complement)

    Chromosome 20 - NC_053231.1Genomic Context describing neighboring genes Neighboring gene endoplasmic reticulum protein 44 Neighboring gene syntaxin 17 Neighboring gene uncharacterized LOC120811021 Neighboring gene SEC61 translocon subunit beta

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_053231.1 Chromosome 20 Reference GAculeatus_UGA_version5 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables nuclear glucocorticoid receptor binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables nuclear receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cellular response to corticotropin-releasing hormone stimulus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of transcription regulator complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    nuclear receptor subfamily 4 group A member 3

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Gasterosteus aculeatus Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GAculeatus_UGA_version5 Primary Assembly

    Genomic

    1. NC_053231.1 Reference GAculeatus_UGA_version5 Primary Assembly

      Range
      8891354..8911085 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040165532.1 → XP_040021466.1  nuclear receptor subfamily 4 group A member 3 isoform X3

      UniProtKB/TrEMBL
      A0AAQ4S7N3
      Related
      ENSGACP00000071027.1, ENSGACT00000074964.1
      Conserved Domains (2) summary
      cd06945
      Location:382 → 610
      NR_LBD_Nurr1_like; The ligand binding domain of Nurr1 and related nuclear receptor proteins, members of nuclear receptor superfamily
      cd06969
      Location:272 → 346
      NR_DBD_NGFI-B; DNA-binding domain of the orphan nuclear receptor, nerve growth factor-induced-B

    2. XM_040165530.1 → XP_040021464.1  nuclear receptor subfamily 4 group A member 3 isoform X1

      UniProtKB/TrEMBL
      G3P2V5
      Related
      ENSGACP00000011928.2, ENSGACT00000011952.2
      Conserved Domains (2) summary
      cd06945
      Location:448 → 676
      NR_LBD_Nurr1_like; The ligand binding domain of Nurr1 and related nuclear receptor proteins, members of nuclear receptor superfamily
      cd06969
      Location:338 → 412
      NR_DBD_NGFI-B; DNA-binding domain of the orphan nuclear receptor, nerve growth factor-induced-B

    3. XM_040165531.1 → XP_040021465.1  nuclear receptor subfamily 4 group A member 3 isoform X2

      UniProtKB/TrEMBL
      A0AAQ4PAH3, A0AAQ4S7N3
      Related
      ENSGACP00000035647.1, ENSGACT00000075834.1
      Conserved Domains (2) summary
      cd06945
      Location:449 → 677
      NR_LBD_Nurr1_like; The ligand binding domain of Nurr1 and related nuclear receptor proteins, members of nuclear receptor superfamily
      cd06969
      Location:339 → 413
      NR_DBD_NGFI-B; DNA-binding domain of the orphan nuclear receptor, nerve growth factor-induced-B
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.