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    tead1a TEA domain family member 1a [ Gasterosteus aculeatus (three-spined stickleback) ]

    Gene ID: 120809526, updated on 10-Oct-2024

    Summary

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    Gene symbol
    tead1a
    Gene description
    TEA domain family member 1a
    See related
    Ensembl:ENSGACG00000003385
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gasterosteus aculeatus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Cottioidei; Gasterosteales; Gasterosteidae; Gasterosteus
    Orthologs
    zebrafish all
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    Genomic context

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    See tead1a in Genome Data Viewer
    Location:
    chromosome: 19
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    100 current GAculeatus_UGA_version5 (GCF_016920845.1) 19 NC_053230.1 (3832831..3866692, complement)

    Chromosome 19 - NC_053230.1Genomic Context describing neighboring genes Neighboring gene rab GTPase-activating protein 1 Neighboring gene Ras association domain family member 10a Neighboring gene parvin, alpha a Neighboring gene microtubule associated monooxygenase, calponin and LIM domain containing 2b

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_053230.1 Chromosome 19 Reference GAculeatus_UGA_version5 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in embryonic organ development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in hippo signaling IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of transcription regulator complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcriptional enhancer factor TEF-1a

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Gasterosteus aculeatus Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GAculeatus_UGA_version5 Primary Assembly

    Genomic

    1. NC_053230.1 Reference GAculeatus_UGA_version5 Primary Assembly

      Range
      3832831..3866692 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040163377.1 → XP_040019311.1  transcriptional enhancer factor TEF-1a isoform X1

      UniProtKB/TrEMBL
      A0AAQ4S912, G3NGK9
      Conserved Domains (1) summary
      smart00426
      Location:31 → 98
      TEA; TEA domain

    2. XM_040163375.1 → XP_040019309.1  transcriptional enhancer factor TEF-1a isoform X1

      UniProtKB/TrEMBL
      A0AAQ4S912, G3NGK9
      Related
      ENSGACP00000071523.1, ENSGACT00000084819.1
      Conserved Domains (1) summary
      smart00426
      Location:31 → 98
      TEA; TEA domain

    3. XM_040163376.1 → XP_040019310.1  transcriptional enhancer factor TEF-1a isoform X1

      UniProtKB/TrEMBL
      A0AAQ4S912, G3NGK9
      Related
      ENSGACP00000004465.2, ENSGACT00000004479.2
      Conserved Domains (1) summary
      smart00426
      Location:31 → 98
      TEA; TEA domain

    4. XM_040163378.1 → XP_040019312.1  transcriptional enhancer factor TEF-1a isoform X2

      UniProtKB/TrEMBL
      A0AAQ4S912
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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    Molecular Biology Databases