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    Spdef SAM pointed domain containing ETS transcription factor [ Dipodomys ordii (Ord's kangaroo rat) ]

    Gene ID: 105995769, updated on 13-Mar-2024

    Summary

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    Gene symbol
    Spdef
    Gene description
    SAM pointed domain containing ETS transcription factor
    See related
    Ensembl:ENSDORG00000016134
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Dipodomys ordii
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Castorimorpha; Heteromyidae; Dipodomyinae; Dipodomys
    Orthologs
    human mouse all
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    Genomic context

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    See Spdef in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    100 current Dord_2.0 (GCF_000151885.1) Unplaced Scaffold NW_012267336.1 (3840742..3846739)

    NW_012267336.1Genomic Context describing neighboring genes Neighboring gene bridge-like lipid transfer protein family member 3A Neighboring gene small nuclear ribonucleoprotein polypeptide C Neighboring gene inflammation and lipid regulator with UBA-like and NBR1-like domains Neighboring gene protein kinase C and casein kinase substrate in neurons 1 Neighboring gene ribosomal protein S10

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_012267336.1 Unplaced Scaffold Reference Dord_2.0

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cell differentiation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    SAM pointed domain-containing Ets transcription factor

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Dipodomys ordii Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Dord_2.0

    Genomic

    1. NW_012267336.1 Reference Dord_2.0

      Range
      3840742..3846739
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_013029611.1 → XP_012885065.1  SAM pointed domain-containing Ets transcription factor isoform X1

      UniProtKB/TrEMBL
      A0A1S3G8P8
      Related
      ENSDORP00000015175.2, ENSDORT00000016134.2
      Conserved Domains (2) summary
      cd08532
      Location:135 → 214
      SAM_PNT-PDEF-like; Sterile alpha motif (SAM)/Pointed domain of prostate-derived ETS factor
      pfam00178
      Location:252 → 333
      Ets; Ets-domain

    2. XM_013029612.1 → XP_012885066.1  SAM pointed domain-containing Ets transcription factor isoform X2

      UniProtKB/TrEMBL
      A0A1S3G8C1
      Conserved Domains (2) summary
      pfam00178
      Location:236 → 317
      Ets; Ets-domain
      cl15755
      Location:135 → 213
      SAM_superfamily; SAM (Sterile alpha motif )
    Nucleotide Protein
    Heading Accession and Version

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