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    Hmgb3 high mobility group box 3 [ Cavia porcellus (domestic guinea pig) ]

    Gene ID: 100723306, updated on 8-Mar-2024

    Summary

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    Gene symbol
    Hmgb3
    Gene description
    high mobility group box 3
    See related
    Ensembl:ENSCPOG00000000601
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cavia porcellus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Caviidae; Cavia
    Orthologs
    human mouse all
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    Genomic context

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    See Hmgb3 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_02 current mCavPor4.1 (GCF_034190915.1) Unplaced Scaffold NW_026947486.1 (117673680..117678415, complement)
    103 previous assembly Cavpor3.0 (GCF_000151735.1) Unplaced Scaffold NT_176206.1 (132085..136798)

    NW_026947486.1Genomic Context describing neighboring genes Neighboring gene myotubularin related protein 1 Neighboring gene CD99 molecule like 2 Neighboring gene small ribosomal subunit protein uS2-like Neighboring gene G protein-coupled receptor 50

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding, bending IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    high mobility group protein B3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034190915.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference mCavPor4.1

    Genomic

    1. NW_026947486.1 Reference mCavPor4.1

      Range
      117673680..117678415 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003461325.5 → XP_003461373.1  high mobility group protein B3

      See identical proteins and their annotated locations for XP_003461373.1

      UniProtKB/TrEMBL
      H0UUA3
      Related
      ENSCPOP00000000530.3
      Conserved Domains (2) summary
      pfam00505
      Location:93 → 160
      HMG_box; HMG (high mobility group) box
      pfam09011
      Location:13 → 78
      HMG_box_2; HMG-box domain

    2. XM_013150953.3 → XP_013006407.1  high mobility group protein B3

      See identical proteins and their annotated locations for XP_013006407.1

      UniProtKB/TrEMBL
      H0UUA3
      Related
      ENSCPOP00000025265.1
      Conserved Domains (2) summary
      pfam00505
      Location:93 → 160
      HMG_box; HMG (high mobility group) box
      pfam09011
      Location:13 → 78
      HMG_box_2; HMG-box domain
    Nucleotide Protein
    Heading Accession and Version

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