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    NR4A3 nuclear receptor subfamily 4 group A member 3 [ Callithrix jacchus (white-tufted-ear marmoset) ]

    Gene ID: 100413732, updated on 10-Oct-2024

    Summary

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    Gene symbol
    NR4A3
    Gene description
    nuclear receptor subfamily 4 group A member 3
    See related
    Ensembl:ENSCJAG00000011288
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Callithrix jacchus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
    Orthologs
    human mouse all
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    Genomic context

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    See NR4A3 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 1 NC_071442.1 (144953339..144996087)
    105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 1 NC_048383.1 (146198252..146240966)

    Chromosome 1 - NC_071442.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC108592688 Neighboring gene uncharacterized LOC128928058 Neighboring gene uncharacterized LOC118143300 Neighboring gene uncharacterized LOC103794196 Neighboring gene 60S ribosomal protein L22-like Neighboring gene syntaxin 17

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables nuclear glucocorticoid receptor binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables nuclear receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cellular response to corticotropin-releasing hormone stimulus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of transcription regulator complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    nuclear receptor subfamily 4 group A member 3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference mCalJa1.2.pat.X

    Genomic

    1. NC_071442.1 Reference mCalJa1.2.pat.X

      Range
      144953339..144996087
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_009000203.3 → XP_008998451.2  nuclear receptor subfamily 4 group A member 3 isoform X3

      UniProtKB/TrEMBL
      A0A8I3X5E5
      Conserved Domains (3) summary
      cd06969
      Location:289 → 363
      NR_DBD_NGFI-B; DNA-binding domain of the orphan nuclear receptor, nerve growth factor-induced-B
      PRK14959
      Location:118 → 186
      PRK14959; DNA polymerase III subunits gamma and tau; Provisional
      cl11397
      Location:395 → 625
      NR_LBD; The ligand binding domain of nuclear receptors, a family of ligand-activated transcription regulators

    2. XM_035253066.2 → XP_035108957.2  nuclear receptor subfamily 4 group A member 3 isoform X1

    3. XM_035253067.2 → XP_035108958.2  nuclear receptor subfamily 4 group A member 3 isoform X2

    4. XM_035253068.2 → XP_035108959.1  nuclear receptor subfamily 4 group A member 3 isoform X3

      UniProtKB/TrEMBL
      A0A8I3X5E5
      Conserved Domains (3) summary
      cd06969
      Location:289 → 363
      NR_DBD_NGFI-B; DNA-binding domain of the orphan nuclear receptor, nerve growth factor-induced-B
      PRK14959
      Location:118 → 186
      PRK14959; DNA polymerase III subunits gamma and tau; Provisional
      cl11397
      Location:395 → 625
      NR_LBD; The ligand binding domain of nuclear receptors, a family of ligand-activated transcription regulators
    Nucleotide Protein
    Heading Accession and Version

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