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    TRIT1 tRNA isopentenyltransferase 1 [ Callithrix jacchus (white-tufted-ear marmoset) ]

    Gene ID: 100401517, updated on 10-Oct-2024

    Summary

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    Gene symbol
    TRIT1
    Gene description
    tRNA isopentenyltransferase 1
    See related
    Ensembl:ENSCJAG00000002620
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Callithrix jacchus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
    Orthologs
    human mouse all
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    Genomic context

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    See TRIT1 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 7 NC_071448.1 (73476995..73533989, complement)
    105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 7 NC_048389.1 (74967002..75022924, complement)

    Chromosome 7 - NC_071448.1Genomic Context describing neighboring genes Neighboring gene 28S ribosomal protein S11, mitochondrial-like Neighboring gene peptidylprolyl isomerase E Neighboring gene succinyl-CoA:3-ketoacid coenzyme A transferase 2, mitochondrial-like Neighboring gene ADP-ribosylation factor 1-like Neighboring gene 40S ribosomal protein SA-like Neighboring gene MYCL proto-oncogene, bHLH transcription factor

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables tRNA dimethylallyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in tRNA modification IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in mitochondrion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    tRNA dimethylallyltransferase
    Names
    tRNA dimethylallyltransferase, mitochondrial

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference mCalJa1.2.pat.X

    Genomic

    1. NC_071448.1 Reference mCalJa1.2.pat.X

      Range
      73476995..73533989 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_054259188.1 → XP_054115163.1  tRNA dimethylallyltransferase isoform X2

    2. XM_054259186.1 → XP_054115161.1  tRNA dimethylallyltransferase isoform X1

      UniProtKB/TrEMBL
      F6WQ42, F6XZI2, U3FSI0

    3. XM_054259187.1 → XP_054115162.1  tRNA dimethylallyltransferase isoform X2

    RNA

    1. XR_008482694.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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