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    SCML1 Scm polycomb group protein like 1 [ Bos taurus (domestic cattle) ]

    Gene ID: 786670, updated on 4-Oct-2024

    Summary

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    Official Symbol
    SCML1provided by VGNC
    Official Full Name
    Scm polycomb group protein like 1provided by VGNC
    Primary source
    VGNC:VGNC:56953
    See related
    BGD:BT26607; Ensembl:ENSBTAG00000017649
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See SCML1 in Genome Data Viewer
    Location:
    chromosome: X
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) X NC_037357.1 (125730721..125749031, complement)

    Chromosome X - NC_037357.1Genomic Context describing neighboring genes Neighboring gene large ribosomal subunit protein uL18-like Neighboring gene retinoic acid induced 2 Neighboring gene calcineurin B homologous protein 1-like Neighboring gene NHS actin remodeling regulator Neighboring gene transfer RNA tryptophan (anticodon CCA)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037357.1 Chromosome X Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    sex comb on midleg-like protein 1
    Names
    sex comb on midleg like 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037357.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      125730721..125749031 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005228415.4 → XP_005228472.1  sex comb on midleg-like protein 1 isoform X4

      See identical proteins and their annotated locations for XP_005228472.1

      Conserved Domains (2) summary
      cd09578
      Location:135 → 203
      SAM_Scm; SAM domain of Scm proteins of Polycomb group
      smart00454
      Location:136 → 203
      SAM; Sterile alpha motif

    2. XM_010822178.3 → XP_010820480.1  sex comb on midleg-like protein 1 isoform X3

      See identical proteins and their annotated locations for XP_010820480.1

      Conserved Domains (4) summary
      cd09578
      Location:261 → 329
      SAM_Scm; SAM domain of Scm proteins of Polycomb group
      smart00454
      Location:262 → 329
      SAM; Sterile alpha motif
      PHA02666
      Location:62 → 185
      PHA02666; hypothetical protein; Provisional
      pfam11029
      Location:156 → 244
      DAZAP2; DAZ associated protein 2 (DAZAP2)

    3. XM_005228414.4 → XP_005228471.1  sex comb on midleg-like protein 1 isoform X2

      See identical proteins and their annotated locations for XP_005228471.1

      Conserved Domains (4) summary
      cd09578
      Location:262 → 330
      SAM_Scm; SAM domain of Scm proteins of Polycomb group
      smart00454
      Location:263 → 330
      SAM; Sterile alpha motif
      PHA02666
      Location:63 → 186
      PHA02666; hypothetical protein; Provisional
      pfam11029
      Location:157 → 245
      DAZAP2; DAZ associated protein 2 (DAZAP2)

    4. XM_005228412.4 → XP_005228469.1  sex comb on midleg-like protein 1 isoform X1

      See identical proteins and their annotated locations for XP_005228469.1

      UniProtKB/TrEMBL
      F1MZP4
      Related
      ENSBTAP00000023476.6, ENSBTAT00000023476.7
      Conserved Domains (4) summary
      cd09578
      Location:289 → 357
      SAM_Scm; SAM domain of Scm proteins of Polycomb group
      smart00454
      Location:290 → 357
      SAM; Sterile alpha motif
      PHA02666
      Location:90 → 213
      PHA02666; hypothetical protein; Provisional
      pfam11029
      Location:184 → 272
      DAZAP2; DAZ associated protein 2 (DAZAP2)
    Nucleotide Protein Strain
    Heading Accession and Version

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