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    SOX13 SRY-box transcription factor 13 [ Bos taurus (domestic cattle) ]

    Gene ID: 788459, updated on 4-Oct-2024

    Summary

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    Official Symbol
    SOX13provided by VGNC
    Official Full Name
    SRY-box transcription factor 13provided by VGNC
    Primary source
    VGNC:VGNC:35142
    See related
    BGD:BT17799; Ensembl:ENSBTAG00000008132
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See SOX13 in Genome Data Viewer
    Location:
    chromosome: 16
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 16 NC_037343.1 (1881611..1912526)

    Chromosome 16 - NC_037343.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC104974354 Neighboring gene small ribosomal subunit protein bS21m-like Neighboring gene ethanolamine kinase 2 Neighboring gene uncharacterized LOC132342432 Neighboring gene renin

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037343.1 Chromosome 16 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cell fate commitment IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcription factor SOX-13
    Names
    SRY (sex determining region Y)-box 13
    SRY-box 13

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037343.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      1881611..1912526
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005216694.5 → XP_005216751.1  transcription factor SOX-13 isoform X1

      See identical proteins and their annotated locations for XP_005216751.1

      UniProtKB/TrEMBL
      E1BL97
      Related
      ENSBTAP00000010692.7, ENSBTAT00000010692.7
      Conserved Domains (1) summary
      cd01388
      Location:467 → 538
      SOX-TCF_HMG-box; SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and ...

    2. XM_005216695.5 → XP_005216752.1  transcription factor SOX-13 isoform X2

      See identical proteins and their annotated locations for XP_005216752.1

      UniProtKB/TrEMBL
      A0AAA9S149
      Related
      ENSBTAP00000079596.1, ENSBTAT00000122837.1
      Conserved Domains (1) summary
      cd01388
      Location:466 → 537
      SOX-TCF_HMG-box; SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and ...
    Nucleotide Protein Strain
    Heading Accession and Version

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