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    LOC100555230 retroviral integration site protein Fli-1 homolog [ Anolis carolinensis (green anole) ]

    Gene ID: 100555230, updated on 14-Feb-2024

    Summary

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    Gene symbol
    LOC100555230
    Gene description
    retroviral integration site protein Fli-1 homolog
    See related
    Ensembl:ENSACAG00000005484
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Anolis carolinensis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Toxicofera; Iguania; Dactyloidae; Anolis
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    Genomic context

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    See LOC100555230 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_02 current rAnoCar3.1.pri (GCF_035594765.1) Unplaced Scaffold NW_026943821.1 (15517822..15556866)
    102 previous assembly AnoCar2.0 (GCF_000090745.1) Unplaced Scaffold NW_003339061.1 (324065..363642, complement)

    NW_026943821.1Genomic Context describing neighboring genes Neighboring gene HAUS augmin like complex subunit 5 Neighboring gene ETS variant transcription factor 2 Neighboring gene RNA binding motif protein 42 Neighboring gene cytochrome c oxidase subunit 6B1 Neighboring gene uncharacterized LOC134293818

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cell differentiation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    retroviral integration site protein Fli-1 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_035594765.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference rAnoCar3.1.pri

    Genomic

    1. NW_026943821.1 Reference rAnoCar3.1.pri

      Range
      15517822..15556866
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_008120940.3 → XP_008119147.1  retroviral integration site protein Fli-1 homolog isoform X1

      UniProtKB/TrEMBL
      H9GA91
      Related
      ENSACAP00000005353.3
      Conserved Domains (2) summary
      smart00413
      Location:282 → 365
      ETS; erythroblast transformation specific domain
      cl15755
      Location:110 → 199
      SAM_superfamily; SAM (Sterile alpha motif )

    2. XM_008120941.3 → XP_008119148.1  retroviral integration site protein Fli-1 homolog isoform X2

      Conserved Domains (2) summary
      smart00413
      Location:266 → 349
      ETS; erythroblast transformation specific domain
      cl15755
      Location:110 → 199
      SAM_superfamily; SAM (Sterile alpha motif )

    3. XM_062962610.1 → XP_062818680.1  retroviral integration site protein Fli-1 homolog isoform X3

    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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    Molecular Biology Databases