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    runx1t1 RUNX1 partner transcriptional co-repressor 1 [ Anolis carolinensis (green anole) ]

    Gene ID: 100567064, updated on 10-Oct-2024

    Summary

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    Gene symbol
    runx1t1
    Gene description
    RUNX1 partner transcriptional co-repressor 1
    See related
    Ensembl:ENSACAG00000003354
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Anolis carolinensis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Toxicofera; Iguania; Dactyloidae; Anolis
    Orthologs
    human mouse all
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    Genomic context

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    See runx1t1 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    RS_2024_02 current rAnoCar3.1.pri (GCF_035594765.1) 4 NC_085844.1 (31905848..32084910)
    102 previous assembly AnoCar2.0 (GCF_000090745.1) 4 NC_014779.1 (17706598..17886666, complement)

    Chromosome 4 - NC_085844.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC134298826 Neighboring gene 5S ribosomal RNA Neighboring gene solute carrier family 26 member 7 Neighboring gene uncharacterized LOC134298828 Neighboring gene leucine rich repeat containing 69

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables transcription corepressor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein CBFA2T1
    Names
    RUNX1 translocation partner 1
    runt-related transcription factor 1; translocated to, 1 (cyclin D-related)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_035594765.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference rAnoCar3.1.pri

    Genomic

    1. NC_085844.1 Reference rAnoCar3.1.pri

      Range
      31905848..32084910
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_008108352.2 → XP_008106559.1  protein CBFA2T1 isoform X3

      UniProtKB/TrEMBL
      A0A803TG59, A0A803TLG7
      Related
      ENSACAP00000036057.1
      Conserved Domains (4) summary
      pfam01753
      Location:493 → 529
      zf-MYND; MYND finger
      pfam07531
      Location:102 → 188
      TAFH; NHR1 homology to TAF
      pfam08788
      Location:317 → 383
      NHR2; NHR2 domain like
      cl23750
      Location:419 → 475
      vATP-synt_E; ATP synthase (E/31 kDa) subunit

    2. XM_008108351.2 → XP_008106558.1  protein CBFA2T1 isoform X1

      UniProtKB/TrEMBL
      A0A803TG59, G1KBV7
      Related
      ENSACAP00000003317.3
      Conserved Domains (4) summary
      pfam01753
      Location:513 → 549
      zf-MYND; MYND finger
      pfam07531
      Location:122 → 208
      TAFH; NHR1 homology to TAF
      pfam08788
      Location:337 → 403
      NHR2; NHR2 domain like
      cl23750
      Location:439 → 495
      vATP-synt_E; ATP synthase (E/31 kDa) subunit

    3. XM_062980189.1 → XP_062836259.1  protein CBFA2T1 isoform X1

      UniProtKB/TrEMBL
      G1KBV7

    4. XM_008108353.3 → XP_008106560.1  protein CBFA2T1 isoform X2

      UniProtKB/TrEMBL
      A0A803SLE1, A0A803TG59
      Related
      ENSACAP00000023781.1
      Conserved Domains (4) summary
      pfam01753
      Location:486 → 522
      zf-MYND; MYND finger
      pfam07531
      Location:95 → 181
      TAFH; NHR1 homology to TAF
      pfam08788
      Location:310 → 376
      NHR2; NHR2 domain like
      cl23750
      Location:412 → 468
      vATP-synt_E; ATP synthase (E/31 kDa) subunit

    RNA

    1. XR_010005918.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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