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PSMG1 proteasome assembly chaperone 1 [ Homo sapiens (human) ]

Gene ID: 8624, updated on 3-Nov-2024

Summary

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Official Symbol
PSMG1provided by HGNC
Official Full Name
proteasome assembly chaperone 1provided by HGNC
Primary source
HGNC:HGNC:3043
See related
Ensembl:ENSG00000183527 MIM:605296; AllianceGenome:HGNC:3043
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
PAC1; Pba1; DSCR2; PAC-1; C21LRP; LRPC21
Summary
Enables molecular adaptor activity. Involved in chaperone-mediated protein complex assembly. Located in several cellular components, including Golgi apparatus; endoplasmic reticulum; and nucleoplasm. Part of protein folding chaperone complex. [provided by Alliance of Genome Resources, Nov 2024]
Expression
Broad expression in testis (RPKM 57.7), thyroid (RPKM 14.4) and 23 other tissues See more
Orthologs
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Genomic context

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See PSMG1 in Genome Data Viewer
Location:
21q22.2
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 21 NC_000021.9 (39174769..39183514, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 21 NC_060945.1 (37559338..37568084, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 21 NC_000021.8 (40546695..40555440, complement)

Chromosome 21 - NC_000021.9Genomic Context describing neighboring genes Neighboring gene ribosomal protein L23a pseudogene 12 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr21:40509167-40510074 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr21:40529419-40530214 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13319 Neighboring gene PCBP2 pseudogene 1 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13320 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18466 Neighboring gene bromodomain and WD repeat domain containing 1 Neighboring gene TIMM9 pseudogene 2 Neighboring gene methyltransferase like 21A pseudogene 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. miR-484 is associated with disease recurrence and promotes migration in prostate cancer.
    Title: miR-484 is associated with disease recurrence and promotes migration in prostate cancer.
  2. RNA-seq evidence of biallelic expression of PSMG1 and 10 neighboring genes in at least one primary human tissue tested indicates that the expression of PSMG1 is uncoupled from the control of the maternally inherited 5mCpG imprints at the WRB differentially methylated region (DMR) in disomic controls or trisomy (Down syndrome) individuals.
    Title: Trisomy 21 Alters DNA Methylation in Parent-of-Origin-Dependent and -Independent Manners.
  3. PSMG1 mutation is associated with Crohn's disease.
    Title: Pseudomonas infection in children with early-onset Crohn's disease: an association with a mutation close to PSMG1.
  4. Data show that an additive gene-gene interaction involving TLR4, PSMG1, TNFRSF6B and IRGM was identified with CD.
    Title: Interaction of Crohn's disease susceptibility genes in an Australian paediatric cohort.
  5. PSMG1 gene expression is increased in classic variant of papillary thyroid carcinoma.
    Title: Differential expression of a set of genes in follicular and classic variants of papillary thyroid carcinoma.
  6. DSCR2 was found to interact with PPARbeta and to inhibit it.
    Title: Down syndrome critical region 2 protein inhibits the transcriptional activity of peroxisome proliferator-activated receptor beta in HEK293 cells.
  7. Genome-wide association study of gene-disease association. (HuGE Navigator)
    Title: Loci on 20q13 and 21q22 are associated with pediatric-onset inflammatory bowel disease.
  8. Further, the results of intracellular localization studies and membrane fractionation assays indicate that DSCR2 is targeted to a cytoplasmic compartment as a soluble form.
    Title: Molecular and cellular characterization of the Down syndrome critical region protein 2.
  9. The DSCR2 protein is associated with the endoplasmic reticulum; it is not an integral membrane protein and it is maintained on the cytoplasmic side of the ER by indirect interaction with the ER membrane or with another protein.
    Title: DSCR2, a Down syndrome critical region protein, is localized to the endoplasmic reticulum of mammalian cells.
  10. two chaperones, designated proteasome assembling chaperone-1 (PAC1) and PAC2, form a heterodimer and are involved in the maturation of mammalian 20S proteasomes
    Title: A heterodimeric complex that promotes the assembly of mammalian 20S proteasomes.
Submit: New GeneRIF Correction

Phenotypes

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Find tests for this gene in the NIH Genetic Testing Registry (GTR)

Review eQTL and phenotype association data in this region using PheGenI

EBI GWAS Catalog

Description
Genome-wide association study of ankylosing spondylitis identifies non-MHC susceptibility loci.
EBI GWAS Catalog
Loci on 20q13 and 21q22 are associated with pediatric-onset inflammatory bowel disease.
EBI GWAS Catalog
Meta-analysis of genome-wide association studies in >80 000 subjects identifies multiple loci for C-reactive protein levels.
EBI GWAS Catalog
Multiethnic meta-analysis of genome-wide association studies in >100 000 subjects identifies 23 fibrinogen-associated Loci but no strong evidence of a causal association between circulating fibrinogen and cardiovascular disease.
EBI GWAS Catalog

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables molecular adaptor activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables molecular adaptor activity IGI
Inferred from Genetic Interaction
more info
 PubMed 
enables proteasome binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
involved_in cerebellar granule cell precursor proliferation IEA
Inferred from Electronic Annotation
more info
  
involved_in chaperone-mediated protein complex assembly IDA
Inferred from Direct Assay
more info
 PubMed 
involved_in chaperone-mediated protein complex assembly IGI
Inferred from Genetic Interaction
more info
 PubMed 
involved_in proteasome core complex assembly IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
located_in Golgi apparatus IDA
Inferred from Direct Assay
more info
  
located_in cytoplasm IDA
Inferred from Direct Assay
more info
 PubMed 
located_in cytosol IDA
Inferred from Direct Assay
more info
  
is_active_in endoplasmic reticulum IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in endoplasmic reticulum IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleoplasm IDA
Inferred from Direct Assay
more info
  
located_in nucleus HDA PubMed 
part_of protein folding chaperone complex IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
proteasome assembly chaperone 1
Names
Down syndrome critical region gene 2
Down syndrome critical region protein 2
chromosome 21 leucine-rich protein
leucine rich protein C21-LRP
proteasome (prosome, macropain) assembly chaperone 1
proteasome assembling chaperone 1
proteasome chaperone homolog 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001261824.1 → NP_001248753.1  proteasome assembly chaperone 1 isoform 3

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) uses an alternate splice site in the coding region, but maintains the reading frame, compared to variant 1. The encoded isoform (3) is shorter than isoform 1.
    Source sequence(s)
    AA731200, AW594615, BE779375, BM462074
    UniProtKB/TrEMBL
    B2RD51
    Conserved Domains (1) summary
    pfam16094
    Location:2 → 282
    PAC1; Proteasome assembly chaperone 4

  2. NM_001320795.1 → NP_001307724.1  proteasome assembly chaperone 1 isoform d

    Status: VALIDATED

    Description
    Transcript Variant: This variant (5) uses an alternate splice site in the 5' coding region, which results in use of a downstream start AUG compared to variant 1. It encodes isoform d, which has a shorter N-terminus compared to isoform a.
    Source sequence(s)
    BE779375, BQ008489, BU543452
    Conserved Domains (1) summary
    pfam16094
    Location:1 → 200
    PAC1; Proteasome assembly chaperone 4

  3. NM_003720.4 → NP_003711.1  proteasome assembly chaperone 1 isoform a

    See identical proteins and their annotated locations for NP_003711.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript and encodes the longest isoform (a).
    Source sequence(s)
    AA731200, AF129408, AW594615, BE779375, BR000236
    Consensus CDS
    CCDS13660.1
    UniProtKB/Swiss-Prot
    B5BUN2, O95456, Q6FHA3, Q6FHD3, Q6S713
    UniProtKB/TrEMBL
    B2RD51
    Related
    ENSP00000329915.3, ENST00000331573.8
    Conserved Domains (1) summary
    pfam16094
    Location:2 → 287
    PAC1; Proteasome assembly chaperone 4

  4. NM_203433.2 → NP_982257.1  proteasome assembly chaperone 1 isoform b

    See identical proteins and their annotated locations for NP_982257.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an exon in the coding region, but maintains the reading frame, compared to variant 1. The encoded isoform (2) is shorter than isoform 1.
    Source sequence(s)
    AA731200, AB451468, AW594615, BE779375
    Consensus CDS
    CCDS13661.1
    UniProtKB/TrEMBL
    B2RD51
    Related
    ENSP00000370286.2, ENST00000380900.2
    Conserved Domains (1) summary
    pfam16094
    Location:2 → 266
    PAC1; Proteasome assembly chaperone 4

RNA

  1. NR_049728.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (4) lacks an internal exon in the 5' region, compared to variant 1. This variant is represented as non-coding because the use of the 5'-most expected translational start codon, as used in variant 1, renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
    Source sequence(s)
    AA731200, AF417108, AW594615, BE779375, FN152980

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000021.9 Reference GRCh38.p14 Primary Assembly

    Range
    39174769..39183514 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024452135.2 → XP_024307903.1  proteasome assembly chaperone 1 isoform X1

    Conserved Domains (1) summary
    pfam16094
    Location:1 → 200
    PAC1; Proteasome assembly chaperone 4

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060945.1 Alternate T2T-CHM13v2.0

    Range
    37559338..37568084 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054324908.1 → XP_054180883.1  proteasome assembly chaperone 1 isoform X1

Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
O95456.1 GenPept UniProtKB/Swiss-Prot:O95456

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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