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ush Zinc finger protein ush [ Tribolium castaneum (red flour beetle) ]

Gene ID: 659918, updated on 24-May-2024

Summary

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Gene symbol
ush
Gene description
Zinc finger protein ush
Locus tag
TcasGA2_TC013689
See related
BEETLEBASE:TC013689
Gene type
protein coding
RefSeq status
MODEL
Organism
Tribolium castaneum
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Coleoptera; Polyphaga; Cucujiformia; Tenebrionidae; Tenebrionidae incertae sedis; Tribolium
Orthologs
fruit fly all
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Genomic context

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See ush in Genome Data Viewer
Location:
chromosome: 5
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_04 current icTriCast1.1 (GCF_031307605.1) 5 NC_087398.1 (9303825..9386024)
103 previous assembly Tcas5.2 (GCF_000002335.3) Linkage Group LG5 NC_007420.3 (5954956..6037157, complement)

Chromosome 5 - NC_087398.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107397943 Neighboring gene potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2 Neighboring gene female sterile (2) ltoPP43 Neighboring gene Charged multivesicular body protein 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA polymerase II-specific DNA-binding transcription factor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heart development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger protein ush
Names
AUGUSTUS-3.0.2_13689
AUGUSTUS-3.0.2_31141
GLEAN_13689
u-shaped
zinc finger protein u-shaped

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_031307605.1-RS_2024_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference icTriCast1.1 Primary Assembly

Genomic

  1. NC_087398.1 Reference icTriCast1.1 Primary Assembly

    Range
    9303825..9386024
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_966184.4 → XP_971277.2  zinc finger protein ush isoform X2

    Conserved Domains (3) summary
    sd00017
    Location:640 → 663
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00019
    Location:696 → 716
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:710 → 730
    zf-H2C2_2; Zinc-finger double domain

  2. XM_015979820.2 → XP_015835306.1  zinc finger protein ush isoform X3

    Conserved Domains (3) summary
    sd00017
    Location:613 → 636
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00019
    Location:669 → 689
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:683 → 703
    zf-H2C2_2; Zinc-finger double domain

  3. XM_015979821.1 → XP_015835307.1  zinc finger protein ush isoform X4

    Conserved Domains (3) summary
    sd00017
    Location:612 → 635
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00019
    Location:668 → 688
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:682 → 702
    zf-H2C2_2; Zinc-finger double domain

  4. XM_008195037.3 → XP_008193259.1  zinc finger protein ush isoform X1

    Conserved Domains (3) summary
    sd00017
    Location:644 → 667
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00019
    Location:700 → 720
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:714 → 734
    zf-H2C2_2; Zinc-finger double domain
Nucleotide Protein Strain
Heading Accession and Version

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