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LOC658441 nucleolar transcription factor 1 [ Tribolium castaneum (red flour beetle) ]

Gene ID: 658441, updated on 12-Apr-2024

Summary

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Gene symbol
LOC658441
Gene description
nucleolar transcription factor 1
Locus tag
TcasGA2_TC009280
See related
BEETLEBASE:TC009280
Gene type
protein coding
RefSeq status
MODEL
Organism
Tribolium castaneum
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Coleoptera; Polyphaga; Cucujiformia; Tenebrionidae; Tenebrionidae incertae sedis; Tribolium
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Genomic context

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See LOC658441 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_04 current icTriCast1.1 (GCF_031307605.1) 3 NC_087396.1 (22911420..22913318)
103 previous assembly Tcas5.2 (GCF_000002335.3) Linkage Group LG7 NC_007422.5 (1967336..1969208, complement)

Chromosome 3 - NC_087396.1Genomic Context describing neighboring genes Neighboring gene purine phosphoribosyltransferase family protein Apf Neighboring gene charged multivesicular body protein shrub Neighboring gene charged multivesicular body protein 4b Neighboring gene uncharacterized LOC100141679

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. BeetleBase in 2010: revisions to provide comprehensive genomic information for Tribolium castaneum. Kim HS, et al. Nucleic Acids Res, 2010 Jan. PMID 19820115, Free PMC Article
  2. The genome of the model beetle and pest Tribolium castaneum. Tribolium Genome Sequencing Consortium, et al. Nature, 2008 Apr 24. PMID 18362917

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
nucleolar transcription factor 1; similar to upstream binding transcription factor, RNA polymerase I
Names
AUGUSTUS-3.0.2_09280
GLEAN_09280
Nucleolar transcription factor 1-like Protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_031307605.1-RS_2024_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference icTriCast1.1 Primary Assembly

Genomic

  1. NC_087396.1 Reference icTriCast1.1 Primary Assembly

    Range
    22911420..22913318
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_964829.5 → XP_969922.1  nucleolar transcription factor 1

    See identical proteins and their annotated locations for XP_969922.1

    UniProtKB/TrEMBL
    D6WS16
    Conserved Domains (2) summary
    COG5648
    Location:127 → 291
    NHP6B; Chromatin-associated proteins containing the HMG domain [Chromatin structure and dynamics]
    cd00084
    Location:132 → 196
    HMG-box; High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and transcription factors. HMGs bind to the minor groove of DNA and have been classified by DNA binding preferences. Two phylogenically distinct groups of Class I ...
Nucleotide Protein Strain
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