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Fkh fork head [ Tribolium castaneum (red flour beetle) ]

Gene ID: 641542, updated on 10-May-2024

Summary

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Gene symbol
Fkh
Gene description
fork head
Locus tag
TcasGA2_TC013245
See related
BEETLEBASE:TC013245
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Tribolium castaneum
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Coleoptera; Polyphaga; Cucujiformia; Tenebrionidae; Tenebrionidae incertae sedis; Tribolium
Also known as
Tc-fkh; forkhead
Orthologs
fruit fly all
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Genomic context

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See Fkh in Genome Data Viewer
Location:
chromosome: 3
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_04 current icTriCast1.1 (GCF_031307605.1) 3 NC_087396.1 (19176770..19178804, complement)
103 previous assembly Tcas5.2 (GCF_000002335.3) Linkage Group LG5 NC_007420.3 (11599342..11601376, complement)

Chromosome 3 - NC_087396.1Genomic Context describing neighboring genes Neighboring gene transient receptor potential cation channel protein painless Neighboring gene hypothetical protein Neighboring gene uncharacterized LOC103313188 Neighboring gene protein D2 Neighboring gene hypoxia-inducible factor 1-alpha Neighboring gene microRNA mir-11623

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Conserved and divergent aspects of terminal patterning in the beetle Tribolium castaneum. Schroder R, et al. Proc Natl Acad Sci U S A, 2000 Jun 6. PMID 10823887, Free PMC Article
  2. BeetleBase in 2010: revisions to provide comprehensive genomic information for Tribolium castaneum. Kim HS, et al. Nucleic Acids Res, 2010 Jan. PMID 19820115, Free PMC Article
  3. The genome of the model beetle and pest Tribolium castaneum. Tribolium Genome Sequencing Consortium, et al. Nature, 2008 Apr 24. PMID 18362917
  4. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  5. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein domain specific binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription factor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in anatomical structure morphogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
fork head
Names
GLEAN_13245

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001039414.2 → NP_001034503.2  fork head

    See identical proteins and their annotated locations for NP_001034503.2

    Status: VALIDATED

    Source sequence(s)
    JANKOB010000003
    UniProtKB/TrEMBL
    D6WMG3, Q9NCL2
    Conserved Domains (2) summary
    smart00339
    Location:140 → 228
    FH; FORKHEAD
    pfam08430
    Location:14 → 139
    Forkhead_N; Forkhead N-terminal region

RefSeqs of Annotated Genomes: GCF_031307605.1-RS_2024_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference icTriCast1.1 Primary Assembly

Genomic

  1. NC_087396.1 Reference icTriCast1.1 Primary Assembly

    Range
    19176770..19178804 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials