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LEPROT leptin receptor overlapping transcript [ Bos taurus (domestic cattle) ]

Gene ID: 613665, updated on 4-Oct-2024

Summary

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Official Symbol
LEPROTprovided by VGNC
Official Full Name
leptin receptor overlapping transcriptprovided by VGNC
Primary source
VGNC:VGNC:30844
See related
BGD:BT30356; Ensembl:ENSBTAG00000005909
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Also known as
OB-RGRP
Orthologs
human mouse all
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Genomic context

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See LEPROT in Genome Data Viewer
Location:
chromosome: 3
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 3 NC_037330.1 (79914158..79927997, complement)

Chromosome 3 - NC_037330.1Genomic Context describing neighboring genes Neighboring gene leptin receptor Neighboring gene transfer RNA arginine (anticodon UCU) Neighboring gene DnaJ heat shock protein family (Hsp40) member C6 Neighboring gene adenylate kinase 4 Neighboring gene large ribosomal subunit protein eL19-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_037330.1 Chromosome 3 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Clone Names

  • MGC127672

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in late endosome to vacuole transport via multivesicular body sorting pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of growth hormone receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
leptin receptor gene-related protein
Names
OB-R gene-related protein
endospanin-1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001034741.1 → NP_001029913.1  leptin receptor gene-related protein

    See identical proteins and their annotated locations for NP_001029913.1

    Status: PROVISIONAL

    Source sequence(s)
    BC103409
    UniProtKB/Swiss-Prot
    Q3SYT0
    UniProtKB/TrEMBL
    A0A452DIS0
    Related
    ENSBTAP00000007762.3, ENSBTAT00000007762.3
    Conserved Domains (1) summary
    pfam04133
    Location:7 → 124
    Vps55; Vacuolar protein sorting 55

RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037330.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    79914158..79927997 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005204483.5 → XP_005204540.2  leptin receptor gene-related protein isoform X1

    UniProtKB/TrEMBL
    A0A3Q1M1I1
    Related
    ENSBTAP00000063579.1, ENSBTAT00000079709.2
    Conserved Domains (1) summary
    pfam04133
    Location:112 → 229
    Vps55; Vacuolar protein sorting 55
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q3SYT0.1 GenPept UniProtKB/Swiss-Prot:Q3SYT0

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials