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Oct major octamer-binding protein [ Strongylocentrotus purpuratus (purple sea urchin) ]

Gene ID: 548625, updated on 14-Dec-2023

Summary

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Gene symbol
Oct
Gene description
major octamer-binding protein
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Strongylocentrotus purpuratus
Lineage
Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea; Euechinoidea; Echinacea; Camarodonta; Echinidea; Strongylocentrotidae; Strongylocentrotus
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Genomic context

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See Oct in Genome Data Viewer
Location:
chromosome: Un
Exon count:
13
Annotation release Status Assembly Chr Location
102 current Spur_5.0 (GCF_000002235.5) Unplaced Scaffold NW_022145594.1 (29916171..29950852, complement)
Build 3.1 previous assembly Spur_3.1 (GCF_000002235.3) Unplaced Scaffold NW_003578185.1 (202614..240260, complement)

NW_022145594.1Genomic Context describing neighboring genes Neighboring gene glycogen synthase kinase-3 beta Neighboring gene uncharacterized LOC753603 Neighboring gene intraflagellar transport 57 Neighboring gene uncharacterized LOC115921319

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. SpOct, a gene encoding the major octamer-binding protein in sea urchin embryos: expression profile, evolutionary relationships, and DNA binding of expressed protein. Char BR, et al. Dev Biol, 1993 Aug. PMID 8344456
  2. A POU gene required for early cleavage and protein accumulation in the sea urchin embryo. Char BR, et al. Development, 1994 Jul. PMID 7924998
  3. Gene structure in the sea urchin Strongylocentrotus purpuratus based on transcriptome analysis. Tu Q, et al. Genome Res, 2012 Oct. PMID 22709795, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
major octamer-binding protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001015510.1 → NP_001015510.1  major octamer-binding protein

    Status: PROVISIONAL

    Source sequence(s)
    L04646
    UniProtKB/TrEMBL
    A0A7M6UMG9
    Conserved Domains (2) summary
    smart00352
    Location:443 → 517
    POU; Found in Pit-Oct-Unc transcription factors
    pfam00046
    Location:541 → 594
    Homeobox; Homeobox domain

RefSeqs of Annotated Genomes: Strongylocentrotus purpuratus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Spur_5.0 Primary Assembly

Genomic

  1. NW_022145594.1 Reference Spur_5.0 Primary Assembly

    Range
    29916171..29950852 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030977000.1 → XP_030832860.1  major octamer-binding protein isoform X2

    UniProtKB/TrEMBL
    A0A7M7N963
    Conserved Domains (2) summary
    smart00352
    Location:445 → 519
    POU; Found in Pit-Oct-Unc transcription factors
    pfam00046
    Location:543 → 597
    Homeobox; Homeobox domain

  2. XM_030977004.1 → XP_030832864.1  major octamer-binding protein isoform X3

    UniProtKB/TrEMBL
    A0A7M7N8T6

  3. XM_030976994.1 → XP_030832854.1  major octamer-binding protein isoform X1

    UniProtKB/TrEMBL
    A0A7M7N8M9
    Conserved Domains (2) summary
    smart00352
    Location:462 → 536
    POU; Found in Pit-Oct-Unc transcription factors
    pfam00046
    Location:560 → 614
    Homeobox; Homeobox domain

  4. XM_030977009.1 → XP_030832869.1  major octamer-binding protein isoform X4

    UniProtKB/TrEMBL
    A0A7M7SUR3
    Conserved Domains (2) summary
    smart00352
    Location:407 → 481
    POU; Found in Pit-Oct-Unc transcription factors
    pfam00046
    Location:505 → 559
    Homeobox; Homeobox domain

  5. XM_030977019.1 → XP_030832879.1  major octamer-binding protein isoform X5

    UniProtKB/TrEMBL
    A0A7M7NAT8
Nucleotide Protein
Heading Accession and Version

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