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TTC9C tetratricopeptide repeat domain 9C [ Canis lupus familiaris (dog) ]

Gene ID: 483782, updated on 17-Aug-2024

Summary

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Official Symbol
TTC9Cprovided by VGNC
Official Full Name
tetratricopeptide repeat domain 9Cprovided by VGNC
Primary source
VGNC:VGNC:47966
See related
Ensembl:ENSCAFG00845008314
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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See TTC9C in Genome Data Viewer
Location:
chromosome: 18
Exon count:
4
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 18 NC_051822.1 (54980711..54993063, complement)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 18 NC_006600.4 (52534003..52546347, complement)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 18 NC_049239.1 (54447841..54460187, complement)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 18 NC_049278.1 (54077065..54089405, complement)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 18 NC_049759.1 (53651561..53663897, complement)

Chromosome 18 - NC_051822.1Genomic Context describing neighboring genes Neighboring gene TATA-box binding protein associated factor 6 like Neighboring gene RNA polymerase II subunit G Neighboring gene zinc finger and BTB domain containing 3 Neighboring gene heterogeneous nuclear ribonucleoprotein U like 2 Neighboring gene G protein subunit gamma 3 Neighboring gene BSCL2 lipid droplet biogenesis associated, seipin

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tetratricopeptide repeat protein 9C

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051822.1 Reference ROS_Cfam_1.0

    Range
    54980711..54993063 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038425292.1 → XP_038281220.1  tetratricopeptide repeat protein 9C isoform X2

    Conserved Domains (3) summary
    TIGR00990
    Location:2 → 127
    3a0801s09; mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)
    TIGR02917
    Location:82 → 140
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:8 → 36
    TPR; TPR repeat [structural motif]

  2. XM_038425291.1 → XP_038281219.1  tetratricopeptide repeat protein 9C isoform X1

    UniProtKB/TrEMBL
    A0A8C0KJF8, A0A8C0MJE2, A0A8I3NAP1
    Related
    ENSCAFP00845011326.1, ENSCAFT00845014618.1
    Conserved Domains (3) summary
    TIGR00990
    Location:2 → 127
    3a0801s09; mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)
    TIGR02917
    Location:82 → 165
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:8 → 36
    TPR; TPR repeat [structural motif]

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049278.1 Alternate UMICH_Zoey_3.1

    Range
    54077065..54089405 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038501561.1 → XP_038357489.1  tetratricopeptide repeat protein 9C isoform X2

    Conserved Domains (3) summary
    TIGR00990
    Location:2 → 127
    3a0801s09; mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)
    TIGR02917
    Location:82 → 140
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:8 → 36
    TPR; TPR repeat [structural motif]

  2. XM_038501560.1 → XP_038357488.1  tetratricopeptide repeat protein 9C isoform X1

    Conserved Domains (3) summary
    TIGR00990
    Location:2 → 127
    3a0801s09; mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)
    TIGR02917
    Location:82 → 165
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:8 → 36
    TPR; TPR repeat [structural motif]

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049759.1 Alternate UNSW_CanFamBas_1.0

    Range
    53651561..53663897 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038628387.1 → XP_038484315.1  tetratricopeptide repeat protein 9C isoform X2

    Conserved Domains (3) summary
    TIGR00990
    Location:2 → 127
    3a0801s09; mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)
    TIGR02917
    Location:82 → 140
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:8 → 36
    TPR; TPR repeat [structural motif]

  2. XM_038628386.1 → XP_038484314.1  tetratricopeptide repeat protein 9C isoform X1

    Conserved Domains (3) summary
    TIGR00990
    Location:2 → 127
    3a0801s09; mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)
    TIGR02917
    Location:82 → 165
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:8 → 36
    TPR; TPR repeat [structural motif]

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049239.1 Alternate UU_Cfam_GSD_1.0

    Range
    54447841..54460187 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038564247.1 → XP_038420175.1  tetratricopeptide repeat protein 9C isoform X2

    Conserved Domains (3) summary
    TIGR00990
    Location:2 → 127
    3a0801s09; mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)
    TIGR02917
    Location:82 → 140
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:8 → 36
    TPR; TPR repeat [structural motif]

  2. XM_038564246.1 → XP_038420174.1  tetratricopeptide repeat protein 9C isoform X1

    UniProtKB/TrEMBL
    A0A8C0KJF8, A0A8C0MJE2, A0A8I3NAP1
    Conserved Domains (3) summary
    TIGR00990
    Location:2 → 127
    3a0801s09; mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)
    TIGR02917
    Location:82 → 165
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:8 → 36
    TPR; TPR repeat [structural motif]

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006600.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    52534003..52546347 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005631611.4 → XP_005631668.1  tetratricopeptide repeat protein 9C isoform X2

    Conserved Domains (3) summary
    TIGR00990
    Location:2 → 127
    3a0801s09; mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)
    TIGR02917
    Location:82 → 140
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:8 → 36
    TPR; TPR repeat [structural motif]

  2. XM_540903.6 → XP_540903.1  tetratricopeptide repeat protein 9C isoform X1

    See identical proteins and their annotated locations for XP_540903.1

    UniProtKB/TrEMBL
    A0A8C0KJF8, A0A8C0MJE2, A0A8I3NAP1
    Conserved Domains (3) summary
    TIGR00990
    Location:2 → 127
    3a0801s09; mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)
    TIGR02917
    Location:82 → 165
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:8 → 36
    TPR; TPR repeat [structural motif]
Nucleotide Protein
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