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APCDD1 APC down-regulated 1 [ Canis lupus familiaris (dog) ]

Gene ID: 480209, updated on 17-Aug-2024

Summary

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Official Symbol
APCDD1provided by VGNC
Official Full Name
APC down-regulated 1provided by VGNC
Primary source
VGNC:VGNC:37980
See related
Ensembl:ENSCAFG00845004706
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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See APCDD1 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
5
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 7 NC_051811.1 (76392764..76424240)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 7 NC_006589.4 (75740632..75772090)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 7 NC_049228.1 (76423530..76454975)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 7 NC_049267.1 (76091150..76122611)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 7 NC_049748.1 (76119370..76149800)

Chromosome 7 - NC_051811.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC119872706 Neighboring gene uncharacterized LOC111096829 Neighboring gene uncharacterized LOC119872707 Neighboring gene uncharacterized LOC102152614 Neighboring gene NSF attachment protein gamma

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables Wnt-protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of Wnt signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein APCDD1; LOW QUALITY PROTEIN: protein APCDD1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051811.1 Reference ROS_Cfam_1.0

    Range
    76392764..76424240
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038672678.1 → XP_038528606.1  protein APCDD1

    UniProtKB/TrEMBL
    A0A8C0QKZ9, A0A8I3RS75
    Related
    ENSCAFP00845006628.1, ENSCAFT00845008418.1
    Conserved Domains (1) summary
    pfam14921
    Location:51 → 282
    APCDDC; Adenomatosis polyposis coli down-regulated 1

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049267.1 Alternate UMICH_Zoey_3.1

    Range
    76091150..76122611
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038482419.1 → XP_038338347.1  LOW QUALITY PROTEIN: protein APCDD1

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049748.1 Alternate UNSW_CanFamBas_1.0

    Range
    76119370..76149800
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038607988.1 → XP_038463916.1  protein APCDD1

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049228.1 Alternate UU_Cfam_GSD_1.0

    Range
    76423530..76454975
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038543878.1 → XP_038399806.1  protein APCDD1

    UniProtKB/TrEMBL
    A0A8C0QKZ9, A0A8I3RS75
    Conserved Domains (1) summary
    pfam14921
    Location:51 → 282
    APCDDC; Adenomatosis polyposis coli down-regulated 1

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006589.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    75740632..75772090
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_537333.5 → XP_537333.2  protein APCDD1

    UniProtKB/TrEMBL
    A0A8C0LI16, A0A8C0M9U1, A0A8C0QKZ9, A0A8P0NJX6
    Conserved Domains (1) summary
    pfam14921
    Location:51 → 282
    APCDDC; Adenomatosis polyposis coli down-regulated 1
Nucleotide Protein
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