U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

ZNF546 zinc finger protein 546 [ Pan troglodytes (chimpanzee) ]

Gene ID: 468879, updated on 17-Aug-2024

Summary

Go to the top of the page Help
Official Symbol
ZNF546provided by VGNC
Official Full Name
zinc finger protein 546provided by VGNC
Primary source
VGNC:VGNC:58070
Locus tag
CK820_G0030443
See related
Ensembl:ENSPTRG00000010987
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See ZNF546 in Genome Data Viewer
Location:
chromosome: 20
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 20 NC_072418.2 (43084219..43104081)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 19 NC_072417.1 (43079255..43104431)

Chromosome 20 - NC_072418.2Genomic Context describing neighboring genes Neighboring gene Fc gamma binding protein Neighboring gene uncharacterized LOC129138135 Neighboring gene proteasome 26S subunit, ATPase 4 Neighboring gene protein PAT1 homolog 1-like Neighboring gene zinc finger protein 780B

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription repressor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
zinc finger protein 546

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072418.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    43084219..43104081
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009435584.5 → XP_009433859.1  zinc finger protein 546 isoform X3

    Conserved Domains (5) summary
    smart00349
    Location:6 → 66
    KRAB; krueppel associated box
    COG5048
    Location:329 → 769
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:557 → 577
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:6 → 45
    KRAB; KRAB box
    pfam13465
    Location:597 → 622
    zf-H2C2_2; Zinc-finger double domain

  2. XM_009435583.5 → XP_009433858.1  zinc finger protein 546 isoform X2

    UniProtKB/TrEMBL
    A0A2J8QFS2
    Conserved Domains (3) summary
    smart00349
    Location:34 → 94
    KRAB; krueppel associated box
    COG5048
    Location:357 → 797
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:585 → 605
    ZF_C2H2; C2H2 Zn finger [structural motif]

  3. XM_524265.9 → XP_524265.2  zinc finger protein 546 isoform X1

    UniProtKB/TrEMBL
    A0A2I3SZM0, A0A2J8QFS0, A0A6D2WS12
    Related
    ENSPTRP00000082392.1
    Conserved Domains (3) summary
    smart00349
    Location:60 → 120
    KRAB; krueppel associated box
    COG5048
    Location:383 → 823
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:611 → 631
    ZF_C2H2; C2H2 Zn finger [structural motif]
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.