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SATB2 SATB homeobox 2 [ Pan troglodytes (chimpanzee) ]

Gene ID: 459856, updated on 10-Oct-2024

Summary

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Official Symbol
SATB2provided by VGNC
Official Full Name
SATB homeobox 2provided by VGNC
Primary source
VGNC:VGNC:2807
Locus tag
CK820_G0014777
See related
Ensembl:ENSPTRG00000012779
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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See SATB2 in Genome Data Viewer
Location:
chromosome: 13
Exon count:
18
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 13 NC_072411.2 (101286372..101575085, complement)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 2B NC_072400.1 (101286248..101481468, complement)

Chromosome 13 - NC_072411.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC129143325 Neighboring gene U7 small nuclear RNA Neighboring gene selenide, water dikinase 1-like Neighboring gene formiminotransferase cyclodeaminase N-terminal like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chromatin remodeling IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
DNA-binding protein SATB2
Names
SATB family member 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072411.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    101286372..101575085 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063791444.1 → XP_063647514.1  DNA-binding protein SATB2 isoform X1

    UniProtKB/TrEMBL
    A0A2I3SX19, A0A2J8N4S6, A0A6D2WX59

  2. XM_063791442.1 → XP_063647512.1  DNA-binding protein SATB2 isoform X1

    UniProtKB/TrEMBL
    A0A2I3SX19, A0A2J8N4S6, A0A6D2WX59

  3. XM_063791443.1 → XP_063647513.1  DNA-binding protein SATB2 isoform X1

    UniProtKB/TrEMBL
    A0A2I3SX19, A0A2J8N4S6, A0A6D2WX59

  4. XM_009443933.5 → XP_009442208.1  DNA-binding protein SATB2 isoform X1

    See identical proteins and their annotated locations for XP_009442208.1

    UniProtKB/TrEMBL
    A0A2I3SX19, A0A2J8N4S6, A0A2J8N4U0, A0A6D2W946, A0A6D2WX59, H2QJ76
    Conserved Domains (4) summary
    smart00389
    Location:614 → 671
    HOX; Homeodomain
    cd11585
    Location:60 → 155
    SATB1_N; N-terminal domain of SATB1 and similar proteins
    pfam02376
    Location:477 → 556
    CUT; CUT domain
    pfam16557
    Location:162 → 232
    CUTL; CUT1-like DNA-binding domain of SATB

  5. XM_063791441.1 → XP_063647511.1  DNA-binding protein SATB2 isoform X1

    UniProtKB/TrEMBL
    A0A2I3SX19, A0A2J8N4S6, A0A6D2WX59

  6. XM_024355008.3 → XP_024210776.1  DNA-binding protein SATB2 isoform X1

    UniProtKB/TrEMBL
    A0A2I3SX19, A0A2J8N4S6, A0A2J8N4U0, A0A6D2W946, A0A6D2WX59, H2QJ76
    Conserved Domains (4) summary
    smart00389
    Location:614 → 671
    HOX; Homeodomain
    cd11585
    Location:60 → 155
    SATB1_N; N-terminal domain of SATB1 and similar proteins
    pfam02376
    Location:477 → 556
    CUT; CUT domain
    pfam16557
    Location:162 → 232
    CUTL; CUT1-like DNA-binding domain of SATB

  7. XM_516012.9 → XP_516012.3  DNA-binding protein SATB2 isoform X1

    See identical proteins and their annotated locations for XP_516012.3

    UniProtKB/TrEMBL
    A0A2I3SX19, A0A2J8N4S6, A0A2J8N4U0, A0A6D2W946, A0A6D2WX59, H2QJ76
    Related
    ENSPTRP00000080249.1
    Conserved Domains (4) summary
    smart00389
    Location:614 → 671
    HOX; Homeodomain
    cd11585
    Location:60 → 155
    SATB1_N; N-terminal domain of SATB1 and similar proteins
    pfam02376
    Location:477 → 556
    CUT; CUT domain
    pfam16557
    Location:162 → 232
    CUTL; CUT1-like DNA-binding domain of SATB

  8. XM_024355009.3 → XP_024210777.1  DNA-binding protein SATB2 isoform X2

    UniProtKB/TrEMBL
    A0A2J8N4U0, A0A6D2W946, H2QJ76
    Conserved Domains (3) summary
    smart00389
    Location:473 → 530
    HOX; Homeodomain
    pfam02376
    Location:336 → 414
    CUT; CUT domain
    pfam16557
    Location:21 → 91
    CUTL; CUT1-like DNA-binding domain of SATB
Nucleotide Protein
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