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PMCH pro-melanin concentrating hormone [ Canis lupus familiaris (dog) ]

Gene ID: 449022, updated on 17-Aug-2024

Summary

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Official Symbol
PMCHprovided by VGNC
Official Full Name
pro-melanin concentrating hormoneprovided by VGNC
Primary source
VGNC:VGNC:44729
See related
Ensembl:ENSCAFG00845009246
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Also known as
MCH
Orthologs
human mouse all
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Genomic context

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See PMCH in Genome Data Viewer
Location:
chromosome: 15
Exon count:
3
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 15 NC_051819.1 (41690821..41691974, complement)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 15 NC_006597.4 (41404422..41405547, complement)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 15 NC_049236.1 (41328497..41329622, complement)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 15 NC_049275.1 (40958046..40959171, complement)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 15 NC_049756.1 (41054180..41055305, complement)

Chromosome 15 - NC_051819.1Genomic Context describing neighboring genes Neighboring gene WASH complex subunit 3 Neighboring gene uncharacterized LOC102151875 Neighboring gene nucleoporin 37 Neighboring gene PARP1 binding protein Neighboring gene uncharacterized LOC111090065 Neighboring gene uncharacterized LOC111090067 Neighboring gene insulin like growth factor 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables melanin-concentrating hormone activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables type 1 melanin-concentrating hormone receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in behavior IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in chemical synaptic transmission IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
pro-MCH

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001005755.1 → NP_001005755.1  pro-MCH precursor

    See identical proteins and their annotated locations for NP_001005755.1

    Status: PROVISIONAL

    Source sequence(s)
    AY725987
    UniProtKB/Swiss-Prot
    Q5XXR2
    UniProtKB/TrEMBL
    A0A8C0LKF3
    Related
    ENSCAFP00845012661.1, ENSCAFT00845016275.1
    Conserved Domains (1) summary
    pfam05824
    Location:83 → 165
    Pro-MCH; Pro-melanin-concentrating hormone (Pro-MCH)

RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051819.1 Reference ROS_Cfam_1.0

    Range
    41690821..41691974 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038687176.1 → XP_038543104.1  pro-MCH isoform X1

    Conserved Domains (1) summary
    pfam05824
    Location:83 → 149
    Pro-MCH; Pro-melanin-concentrating hormone (Pro-MCH)

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049275.1 Alternate UMICH_Zoey_3.1

    Range
    40958046..40959171 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049756.1 Alternate UNSW_CanFamBas_1.0

    Range
    41054180..41055305 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049236.1 Alternate UU_Cfam_GSD_1.0

    Range
    41328497..41329622 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006597.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    41404422..41405547 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q5XXR2.1 GenPept UniProtKB/Swiss-Prot:Q5XXR2

Gene LinkOut

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