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lbl ladybird late [ Drosophila melanogaster (fruit fly) ]

Gene ID: 42541, updated on 2-Nov-2024

Summary

Official Symbol
lblprovided by FlyBase
Official Full Name
ladybird lateprovided by FlyBase
Primary source
FLYBASE:FBgn0008651
Locus tag
Dmel_CG6570
See related
AllianceGenome:FB:FBgn0008651
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Drosophila melanogaster
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
CG6570; Dmel\CG6570; lb; Lb; Lbl; NK?; nkch4; NKch4
Summary
Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and sequence-specific double-stranded DNA binding activity. Involved in several processes, including imaginal disc morphogenesis; myoblast proliferation; and regulation of cell fate specification. Located in nucleus. Is expressed in several structures, including anal pad; anal pad primordium; anterior abdominal segment; epidermis; and sensory nervous system primordium. Human ortholog(s) of this gene implicated in congenital central hypoventilation syndrome. Orthologous to several human genes including LBX1 (ladybird homeobox 1). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
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Genomic context

See lbl in Genome Data Viewer
Location:
93E1-93E1; 3-72 cM
Exon count:
4
Annotation release Status Assembly Chr Location
Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3R NT_033777.3 (21409979..21434133, complement)
Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3R NT_033777.2 (17235701..17259855, complement)

Chromosome 3R - NT_033777.3Genomic Context describing neighboring genes Neighboring gene Chemosensory protein B 93a Neighboring gene Chemosensory protein B 93b Neighboring gene long non-coding RNA:CR44089 Neighboring gene ladybird early

Genomic regions, transcripts, and products

Bibliography

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Gene Ontology Provided by FlyBase

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 
enables DNA-binding transcription factor activity, RNA polymerase II-specific IBA
Inferred from Biological aspect of Ancestor
more info
 
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 
enables sequence-specific double-stranded DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
 
Component Evidence Code Pubs
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in nucleus IDA
Inferred from Direct Assay
more info
PubMed 

General protein information

Preferred Names
ladybird late
Names
CG6570-PA
CG6570-PB
CG6570-PC
NK-cluster homeobox 4
lady-bird-late
ladybird
lbl-PA
lbl-PB
lbl-PC

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NT_033777.3 Reference assembly

    Range
    21409979..21434133 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001275876.2NP_001262805.1  ladybird late, isoform C [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001262805.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A0B4KH37
    Conserved Domains (2) summary
    COG5576
    Location:206332
    COG5576; Homeodomain-containing transcription factor [Transcription]
    pfam00046
    Location:254307
    Homeobox; Homeobox domain
  2. NM_079710.4NP_524434.2  ladybird late, isoform A [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_524434.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    P91626, Q9VDA2
    Related
    FBpp0083491
    Conserved Domains (1) summary
    pfam00046
    Location:254307
    Homeobox; Homeobox domain
  3. NM_001144620.2NP_001138092.1  ladybird late, isoform B [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001138092.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q4V727