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Tfb4 transcription factor B4 [ Apis mellifera (honey bee) ]

Gene ID: 411231, updated on 2-Oct-2024

Summary

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Gene symbol
Tfb4
Gene description
transcription factor B4
Gene type
protein coding
RefSeq status
MODEL
Organism
Apis mellifera
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Apoidea; Anthophila; Apidae; Apis
Also known as
GB42561
Orthologs
fruit fly all
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Genomic context

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See Tfb4 in Genome Data Viewer
Location:
chromosome: LG7
Exon count:
6
Annotation release Status Assembly LG Location
104 current Amel_HAv3.1 (GCF_003254395.2) LG7 NC_037644.1 (2346358..2347968)
103 previous assembly Amel_4.5 (GCF_000002195.4) LG7 NC_007076.3 (2646273..2649144, complement)

Linkage Group LG7 - NC_037644.1Genomic Context describing neighboring genes Neighboring gene tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon Neighboring gene uncharacterized LOC725708 Neighboring gene malate dehydrogenase 2 Neighboring gene dynein light chain 1, axonemal-like Neighboring gene zinc finger protein Zpr1 Neighboring gene serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Differential expression of endogenous plant cell wall degrading enzyme genes in the stick insect (Phasmatodea) midgut. Shelomi M, et al. BMC Genomics, 2014 Oct 21. PMID 25331961, Free PMC Article
  2. Insights into social insects from the genome of the honeybee Apis mellifera. Honeybee Genome Sequencing Consortium. Nature, 2006 Oct 26. PMID 17073008, Free PMC Article
  3. ProtoBee: hierarchical classification and annotation of the honey bee proteome. Kaplan N, et al. Genome Res, 2006 Nov. PMID 17065614, Free PMC Article
  4. Finding the missing honey bee genes: lessons learned from a genome upgrade. Elsik CG, et al. BMC Genomics, 2014 Jan 30. PMID 24479613, Free PMC Article
  5. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in nucleotide-excision repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of transcription factor TFIIH core complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of transcription factor TFIIH holo complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
general transcription factor IIH subunit 3
Names
general transcription factor IIH, polypeptide 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Apis mellifera Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Amel_HAv3.1 Primary Assembly

Genomic

  1. NC_037644.1 Reference Amel_HAv3.1 Primary Assembly

    Range
    2346358..2347968
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_394705.6 → XP_394705.3  general transcription factor IIH subunit 3

    UniProtKB/TrEMBL
    A0A7M7R708, A0A8B9AXK2
    Conserved Domains (1) summary
    pfam03850
    Location:8 → 268
    Tfb4; Transcription factor Tfb4
Nucleotide Protein Strain
Heading Accession and Version

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