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LOC410534 uncharacterized LOC410534 [ Apis mellifera (honey bee) ]

Gene ID: 410534, updated on 1-Oct-2024

Summary

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Gene symbol
LOC410534
Gene description
uncharacterized LOC410534
Gene type
protein coding
RefSeq status
MODEL
Organism
Apis mellifera
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Apoidea; Anthophila; Apidae; Apis
Also known as
GB15836; GB52718
Orthologs
all
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Genomic context

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See LOC410534 in Genome Data Viewer
Location:
chromosome: LG14
Exon count:
7
Annotation release Status Assembly LG Location
104 current Amel_HAv3.1 (GCF_003254395.2) LG14 NC_037651.1 (8762018..8785564)
103 previous assembly Amel_4.5 (GCF_000002195.4) LG14 NC_007083.3 (7942103..7966179, complement)

Linkage Group LG14 - NC_037651.1Genomic Context describing neighboring genes Neighboring gene ceramide-1-phosphate transfer protein Neighboring gene Concentrative nucleoside transporter 2 Neighboring gene microRNA mir-3788 Neighboring gene protein lozenge Neighboring gene segmentation protein Runt Neighboring gene uncharacterized LOC102655921

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Insights into social insects from the genome of the honeybee Apis mellifera. Honeybee Genome Sequencing Consortium. Nature, 2006 Oct 26. PMID 17073008, Free PMC Article
  2. ProtoBee: hierarchical classification and annotation of the honey bee proteome. Kaplan N, et al. Genome Res, 2006 Nov. PMID 17065614, Free PMC Article
  3. Finding the missing honey bee genes: lessons learned from a genome upgrade. Elsik CG, et al. BMC Genomics, 2014 Jan 30. PMID 24479613, Free PMC Article
  4. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  5. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized protein LOC410534

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Apis mellifera Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Amel_HAv3.1 Primary Assembly

Genomic

  1. NC_037651.1 Reference Amel_HAv3.1 Primary Assembly

    Range
    8762018..8785564
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_394013.7 → XP_394013.5  uncharacterized protein LOC410534

    UniProtKB/TrEMBL
    A0A7M7R7S0, A0A8B9B564
    Conserved Domains (1) summary
    pfam00853
    Location:97 → 218
    Runt; Runt domain
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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Research Materials