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HTR1F 5-hydroxytryptamine receptor 1F [ Sus scrofa (pig) ]

Gene ID: 397187, updated on 17-Aug-2024

Summary

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Official Symbol
HTR1Fprovided by VGNC
Official Full Name
5-hydroxytryptamine receptor 1Fprovided by VGNC
Primary source
VGNC:VGNC:88999
See related
Ensembl:ENSSSCG00000030227
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Low expression observed in reference dataset See more
Orthologs
human mouse all
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Genomic context

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See HTR1F in Genome Data Viewer
Location:
chromosome: 13
Exon count:
3
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 13 NC_010455.5 (167951444..167987391, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 13 NC_010455.4 (178815949..178844211, complement)

Chromosome 13 - NC_010455.5Genomic Context describing neighboring genes Neighboring gene zinc finger protein 654 Neighboring gene CGG triplet repeat binding protein 1 Neighboring gene uncharacterized LOC110256256 Neighboring gene POU class 1 homeobox 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. Molecular cloning and expression of the porcine trigeminal ganglion cDNA encoding a 5-ht(1F) receptor. Bhalla P, et al. Eur J Pharmacol, 2002 Feb 1. PMID 11834243
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables G protein-coupled serotonin receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables neurotransmitter receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in G protein-coupled receptor signaling pathway, coupled to cyclic nucleotide second messenger IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in chemical synaptic transmission IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in dendrite IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
5-hydroxytryptamine receptor 1F
Names
5-HT1F receptor

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_214101.1 → NP_999266.1  5-hydroxytryptamine receptor 1F

    See identical proteins and their annotated locations for NP_999266.1

    Status: PROVISIONAL

    Source sequence(s)
    AF255663
    UniProtKB/TrEMBL
    A0A4X1UP98, Q9GKI2
    Conserved Domains (2) summary
    pfam00001
    Location:41 → 347
    7tm_1; 7 transmembrane receptor (rhodopsin family)
    cl21561
    Location:33 → 155
    7tm_4; Olfactory receptor

RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010455.5 Reference Sscrofa11.1 Primary Assembly

    Range
    167951444..167987391 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005670286.3 → XP_005670343.2  5-hydroxytryptamine receptor 1F isoform X1

    UniProtKB/TrEMBL
    A0A4X1UP98, A0A8D0IQZ7, A0A8D1D811, I3L7F4
    Related
    ENSSSCP00000019959.2, ENSSSCT00000030824.3
    Conserved Domains (1) summary
    cd15334
    Location:24 → 359
    7tmA_5-HT1F; serotonin receptor subtype 1F, member of the class A family of seven-transmembrane G protein-coupled receptors
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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