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RXRG retinoid X receptor gamma [ Gallus gallus (chicken) ]

Gene ID: 396231, updated on 10-Oct-2024

Summary

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Symbol
RXRGprovided by CGNC
Full Name
retinoid X receptor gammaprovided by CGNC
Primary source
CGNC:49710
See related
Ensembl:ENSGALG00010010515
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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See RXRG in Genome Data Viewer
Location:
chromosome: 8
Exon count:
11
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 8 NC_052539.1 (5132232..5155427)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 8 NC_052580.1 (5144330..5167491)

Chromosome 8 - NC_052539.1Genomic Context describing neighboring genes Neighboring gene phosphohistidine phosphatase 1 like Neighboring gene selectin E Neighboring gene uncharacterized LOC112532902 Neighboring gene LIM homeobox transcription factor 1, alpha

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. RXRG associated in PPAR signal regulated the differentiation of primordial germ cell. Cheng S, et al. J Cell Biochem, 2018 Aug. PMID 29738084
  2. The chicken retinoid-X-receptor-gamma gene gives rise to two distinct species of mRNA with different patterns of expression. Seleiro EA, et al. Biochem J, 1994 Jul 1. PMID 8037682, Free PMC Article
  3. A member of the RXR nuclear receptor family is expressed in neural-crest-derived cells of the developing chick peripheral nervous system. Rowe A, et al. Development, 1991 Mar. PMID 1652422
  4. Conservation of signaling pathways of xenobiotic-sensing orphan nuclear receptors, chicken xenobiotic receptor, constitutive androstane receptor, and pregnane X receptor, from birds to humans. Handschin C, et al. Mol Endocrinol, 2001 Sep. PMID 11518807
  5. Distribution of the cellular retinoic acid binding protein CRABP-I in the developing chick optic tectum. Propping C, et al. Brain Res, 2007 Sep 7. PMID 17706616

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables nuclear receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nuclear steroid receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables retinoic acid-responsive element binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in anatomical structure development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in response to retinoic acid IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in retinoic acid receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of RNA polymerase II transcription regulator complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
retinoic acid receptor RXR-gamma
Names
nuclear receptor subfamily 2 group B member 3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_205294.2 → NP_990625.2  retinoic acid receptor RXR-gamma

    Status: PROVISIONAL

    Source sequence(s)
    JAENSK010000237
    UniProtKB/TrEMBL
    A0A8V0Y5L7
    Related
    ENSGALP00010014248.1, ENSGALT00010025094.1
    Conserved Domains (2) summary
    cd06943
    Location:237 → 445
    NR_LBD_RXR_like; The ligand binding domain of the retinoid X receptor and Ultraspiracle, members of nuclear receptor superfamily
    cd06956
    Location:141 → 217
    NR_DBD_RXR; DNA-binding domain of retinoid X receptor (RXR) is composed of two C4-type zinc fingers

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052539.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    5132232..5155427
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015290246.4 → XP_015145732.2  retinoic acid receptor RXR-gamma isoform X1

    UniProtKB/TrEMBL
    A0A8V0Y109
    Conserved Domains (2) summary
    cd06956
    Location:185 → 261
    NR_DBD_RXR; DNA-binding domain of retinoid X receptor (RXR) is composed of two C4-type zinc fingers
    cl11397
    Location:281 → 447
    NR_LBD; The ligand binding domain of nuclear receptors, a family of ligand-activated transcription regulators

  2. XM_015290249.4 → XP_015145735.1  retinoic acid receptor RXR-gamma isoform X3

    UniProtKB/TrEMBL
    A0A8V0Y5M2
    Related
    ENSGALP00010014253.1, ENSGALT00010025101.1
    Conserved Domains (3) summary
    cd06943
    Location:281 → 489
    NR_LBD_RXR_like; The ligand binding domain of the retinoid X receptor and Ultraspiracle, members of nuclear receptor superfamily
    cd06956
    Location:185 → 261
    NR_DBD_RXR; DNA-binding domain of retinoid X receptor (RXR) is composed of two C4-type zinc fingers
    pfam11825
    Location:82 → 181
    Nuc_recep-AF1; Nuclear/hormone receptor activator site AF-1

  3. XM_015290248.4 → XP_015145734.2  retinoic acid receptor RXR-gamma isoform X2

    UniProtKB/TrEMBL
    A0A8V0Y109
    Conserved Domains (2) summary
    cd06956
    Location:141 → 217
    NR_DBD_RXR; DNA-binding domain of retinoid X receptor (RXR) is composed of two C4-type zinc fingers
    cl11397
    Location:237 → 403
    NR_LBD; The ligand binding domain of nuclear receptors, a family of ligand-activated transcription regulators

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052580.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    5144330..5167491
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046922397.1 → XP_046778353.1  retinoic acid receptor RXR-gamma isoform X1

  2. XM_046922399.1 → XP_046778355.1  retinoic acid receptor RXR-gamma isoform X3

  3. XM_046922398.1 → XP_046778354.1  retinoic acid receptor RXR-gamma isoform X2

Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P28701.1 GenPept UniProtKB/Swiss-Prot:P28701

Gene LinkOut

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Molecular Biology Databases
Research Materials