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shr2 orphan steroid hormone receptor 2 [ Strongylocentrotus purpuratus (purple sea urchin) ]

Gene ID: 373398, updated on 14-Dec-2023

Summary

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Gene symbol
shr2
Gene description
orphan steroid hormone receptor 2
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Strongylocentrotus purpuratus
Lineage
Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea; Euechinoidea; Echinacea; Camarodonta; Echinidea; Strongylocentrotidae; Strongylocentrotus
Also known as
SPSHR2
Annotation information
Annotation category: partial on reference assembly
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Genomic context

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See shr2 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
15
Annotation release Status Assembly Chr Location
102 current Spur_5.0 (GCF_000002235.5) Unplaced Scaffold NW_022145612.1 (13621910..13654699)
Build 3.1 previous assembly Spur_3.1 (GCF_000002235.3) Unplaced Scaffold NW_003579291.1 (8579..37643)

NW_022145612.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC577313 Neighboring gene RNA polymerase II associated protein 3 Neighboring gene EGF domain specific O-linked N-acetylglucosamine transferase Neighboring gene uncharacterized LOC105439903 Neighboring gene NF-kappa-B essential modulator

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Differential cellular compartmentalization of the nuclear receptor SpSHR2 splicing variants in early sea urchin embryos. Kontrogianni-Konstantopoulos A, et al. Mol Reprod Dev, 2001 Oct. PMID 11553912
  2. Embryonic and post-embryonic utilization and subcellular localization of the nuclear receptor SpSHR2 in the sea urchin. Kontrogianni-Konstantopoulos A, et al. J Cell Sci, 1998 Aug. PMID 9664037
  3. A novel sea urchin nuclear receptor encoded by alternatively spliced maternal RNAs. Kontrogianni-Konstantopoulos A, et al. Dev Biol, 1996 Aug 1. PMID 8806817
  4. A perturbation model of the gene regulatory network for oral and aboral ectoderm specification in the sea urchin embryo. Su YH, et al. Dev Biol, 2009 May 15. PMID 19268450, Free PMC Article
  5. Gene structure in the sea urchin Strongylocentrotus purpuratus based on transcriptome analysis. Tu Q, et al. Genome Res, 2012 Oct. PMID 22709795, Free PMC Article

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nuclear receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in anatomical structure development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
orphan steroid hormone receptor 2
Names
steroid hormone receptor spshr2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001123496.1 → NP_001116968.1  orphan steroid hormone receptor 2

    See identical proteins and their annotated locations for NP_001116968.1

    Status: PROVISIONAL

    Source sequence(s)
    U38281
    UniProtKB/Swiss-Prot
    Q26622, Q26624, Q26625, Q7JPB0
    UniProtKB/TrEMBL
    B3FNS4
    Conserved Domains (2) summary
    cd06952
    Location:341 → 562
    NR_LBD_TR2_like; The ligand binding domain of the orphan nuclear receptors TR4 and TR2
    cd06967
    Location:82 → 168
    NR_DBD_TR2_like; DNA-binding domain of the TR2 and TR4 (human testicular receptor 2 and 4) is composed of two C4-type zinc fingers

RefSeqs of Annotated Genomes: Strongylocentrotus purpuratus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Spur_5.0 Primary Assembly

Genomic

  1. NW_022145612.1 Reference Spur_5.0 Primary Assembly

    Range
    13621910..13654699
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q26622.1 GenPept UniProtKB/Swiss-Prot:Q26622

Gene LinkOut

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Molecular Biology Databases
Research Materials