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Nudcd1 NudC domain containing 1 [ Rattus norvegicus (Norway rat) ]

Gene ID: 362906, updated on 10-Jul-2024

Summary

Official Symbol
Nudcd1provided by RGD
Official Full Name
NudC domain containing 1provided by RGD
Primary source
RGD:1310624
See related
EnsemblRapid:ENSRNOG00000024929 AllianceGenome:RGD:1310624
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1310624
Summary
Predicted to be located in cytosol and nucleoplasm. Orthologous to human NUDCD1 (NudC domain containing 1). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in Adrenal (RPKM 78.7), Testes (RPKM 70.9) and 9 other tissues See more
Orthologs
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Genomic context

See Nudcd1 in Genome Data Viewer
Location:
7q31
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 7 NC_086025.1 (77436035..77480651, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 7 NC_051342.1 (75550650..75595976, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 7 NC_005106.4 (83302778..83348534, complement)

Chromosome 7 - NC_086025.1Genomic Context describing neighboring genes Neighboring gene thyrotropin releasing hormone receptor Neighboring gene small nucleolar RNA SNORA17 Neighboring gene ENY2, transcription and export complex 2 subunit Neighboring gene PKHD1 like 1 Neighboring gene estrogen receptor binding site associated antigen 9

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

General gene information

Markers

Gene Ontology Provided by RGD

Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 
located_in cytosol ISO
Inferred from Sequence Orthology
more info
 
located_in nucleoplasm IEA
Inferred from Electronic Annotation
more info
 
located_in nucleoplasm ISO
Inferred from Sequence Orthology
more info
 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
nudC domain-containing protein 1
NP_001124033.1
XP_006241676.1
XP_038935443.1
XP_063119907.1
XP_063119908.1
XP_063119910.1
XP_063119911.1
XP_063119912.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001130561.2NP_001124033.1  nudC domain-containing protein 1

    See identical proteins and their annotated locations for NP_001124033.1

    Status: PROVISIONAL

    Source sequence(s)
    BC169014
    UniProtKB/TrEMBL
    A0A9K3Y8F7, B5DFD1, F7F163
    Related
    ENSRNOP00000091595.2, ENSRNOT00000102595.2
    Conserved Domains (1) summary
    cl00175
    Location:275358
    alpha-crystallin-Hsps_p23-like; alpha-crystallin domain (ACD) found in alpha-crystallin-type small heat shock proteins, and a similar domain found in p23 (a cochaperone for Hsp90) and in other p23-like proteins.

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086025.1 Reference GRCr8

    Range
    77436035..77480651 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006241614.5XP_006241676.1  nudC domain-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A8I6AGF4
    Conserved Domains (1) summary
    cl00175
    Location:274357
    alpha-crystallin-Hsps_p23-like; alpha-crystallin domain (ACD) found in alpha-crystallin-type small heat shock proteins, and a similar domain found in p23 (a cochaperone for Hsp90) and in other p23-like proteins.
  2. XM_063263838.1XP_063119908.1  nudC domain-containing protein 1 isoform X3

  3. XM_063263837.1XP_063119907.1  nudC domain-containing protein 1 isoform X2

    Related
    ENSRNOP00000006685.7, ENSRNOT00000006685.7
  4. XM_063263841.1XP_063119911.1  nudC domain-containing protein 1 isoform X6

  5. XM_039079515.2XP_038935443.1  nudC domain-containing protein 1 isoform X4

    Conserved Domains (1) summary
    cl00175
    Location:124207
    alpha-crystallin-Hsps_p23-like; alpha-crystallin domain (ACD) found in alpha-crystallin-type small heat shock proteins, and a similar domain found in p23 (a cochaperone for Hsp90) and in other p23-like proteins.
  6. XM_063263842.1XP_063119912.1  nudC domain-containing protein 1 isoform X7

  7. XM_063263840.1XP_063119910.1  nudC domain-containing protein 1 isoform X5