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Plxdc2 plexin domain containing 2 [ Rattus norvegicus (Norway rat) ]

Gene ID: 361282, updated on 17-Aug-2024

Summary

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Symbol
Plxdc2provided by RGD
Full Name
plexin domain containing 2provided by RGD
Primary source
RGD:1305962
See related
EnsemblRapid:ENSRNOG00000000142 AllianceGenome:RGD:1305962
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Predicted to be integral component of membrane. Orthologous to human PLXDC2 (plexin domain containing 2). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in Adrenal (RPKM 540.0), Lung (RPKM 518.9) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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Location:
17q12.3
Exon count:
21
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 17 NC_086035.1 (84077793..84502831)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 17 NC_051352.1 (79169238..79594279)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 17 NC_005116.4 (83221795..83619291)

Chromosome 17 - NC_086035.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA SNORA17 Neighboring gene MAM and LDL receptor class A domain containing 1 Neighboring gene U6 spliceosomal RNA Neighboring gene uncharacterized LOC134482612 Neighboring gene uncharacterized LOC134482613 Neighboring gene uncharacterized LOC134482614 Neighboring gene uncharacterized LOC134482615

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Proteomic analysis of podocyte exosome-enriched fraction from normal human urine. Prunotto M, et al. J Proteomics, 2013 Apr 26. PMID 23376485
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RGD

Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
plexin domain-containing protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001108422.2 → NP_001101892.1  plexin domain-containing protein 2 precursor

    See identical proteins and their annotated locations for NP_001101892.1

    Status: PROVISIONAL

    Source sequence(s)
    BC168868
    UniProtKB/TrEMBL
    B5DEZ8, F7EUH5
    Related
    ENSRNOP00000000155.6, ENSRNOT00000000155.6
    Conserved Domains (2) summary
    pfam01437
    Location:327 → 372
    PSI; Plexin repeat
    cl02648
    Location:191 → 282
    NIDO; Nidogen-like

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086035.1 Reference GRCr8

    Range
    84077793..84502831
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039095938.2 → XP_038951866.1  plexin domain-containing protein 2 isoform X3

    UniProtKB/TrEMBL
    B5DEZ8, F7EUH5
    Conserved Domains (2) summary
    pfam01437
    Location:327 → 372
    PSI; Plexin repeat
    cl02648
    Location:191 → 282
    NIDO; Nidogen-like

  2. XM_039095937.2 → XP_038951865.1  plexin domain-containing protein 2 isoform X3

    UniProtKB/TrEMBL
    B5DEZ8, F7EUH5
    Conserved Domains (2) summary
    pfam01437
    Location:327 → 372
    PSI; Plexin repeat
    cl02648
    Location:191 → 282
    NIDO; Nidogen-like

  3. XM_063276640.1 → XP_063132710.1  plexin domain-containing protein 2 isoform X3

    UniProtKB/TrEMBL
    B5DEZ8, F7EUH5

  4. XM_039095939.2 → XP_038951867.1  plexin domain-containing protein 2 isoform X3

    UniProtKB/TrEMBL
    B5DEZ8, F7EUH5
    Conserved Domains (2) summary
    pfam01437
    Location:327 → 372
    PSI; Plexin repeat
    cl02648
    Location:191 → 282
    NIDO; Nidogen-like

  5. XM_063276638.1 → XP_063132708.1  plexin domain-containing protein 2 isoform X3

    UniProtKB/TrEMBL
    B5DEZ8, F7EUH5

  6. XM_039095940.2 → XP_038951868.1  plexin domain-containing protein 2 isoform X3

    UniProtKB/TrEMBL
    B5DEZ8, F7EUH5
    Conserved Domains (2) summary
    pfam01437
    Location:327 → 372
    PSI; Plexin repeat
    cl02648
    Location:191 → 282
    NIDO; Nidogen-like

  7. XM_063276639.1 → XP_063132709.1  plexin domain-containing protein 2 isoform X3

    UniProtKB/TrEMBL
    B5DEZ8, F7EUH5

  8. XM_017600633.3 → XP_017456122.1  plexin domain-containing protein 2 isoform X4

    UniProtKB/TrEMBL
    F7EUH5
    Related
    ENSRNOP00000080623.2, ENSRNOT00000117521.2

  9. XM_039095936.2 → XP_038951864.1  plexin domain-containing protein 2 isoform X2

    UniProtKB/TrEMBL
    F7EUH5
    Conserved Domains (2) summary
    pfam01437
    Location:339 → 384
    PSI; Plexin repeat
    cl02648
    Location:203 → 294
    NIDO; Nidogen-like

  10. XM_039095935.2 → XP_038951863.1  plexin domain-containing protein 2 isoform X1

    UniProtKB/TrEMBL
    F7EUH5
    Related
    ENSRNOP00000106027.1, ENSRNOT00000134561.1
    Conserved Domains (2) summary
    pfam01437
    Location:339 → 384
    PSI; Plexin repeat
    cl02648
    Location:203 → 294
    NIDO; Nidogen-like

  11. XM_063276641.1 → XP_063132711.1  plexin domain-containing protein 2 isoform X5

    UniProtKB/TrEMBL
    F7EUH5
Nucleotide Protein Strain
Heading Accession and Version

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