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BF9343_0429 putative outer membrane protein [ Bacteroides fragilis NCTC 9343 ]

Gene ID: 3286183, discontinued on 6-Feb-2015
  • All Gene records for this genome have been discontinued due to a change in scope for prokaryotic genomes in Gene. At the time this Gene record was discontinued, the RefSeq genome was re-annotated with the following features at this location:

Summary

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Gene symbol
BF9343_0429
Gene description
putative outer membrane protein
Locus tag
BF9343_0429
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bacteroides fragilis NCTC 9343 (culture-collection: NCTC:9343)
Lineage
Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides
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Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003228.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Experimentally confirmed to be O-glycosylated in B. fragilis 9343
    Title: A general O-glycosylation system important to the physiology of a major human intestinal symbiont.
Submit: New GeneRIF Correction

General gene information

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Miscellaneous features

  • Loc: c527352-526852 Pfam match to entry PF03938 OmpH, Outer membrane protein (OmpH-like), score 26.7, E-value 1.3e-05
  • Loc: c527352-527296 Signal peptide predicted for BF0447 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.999 between residues 19 and 20

General protein information

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Names
putative outer membrane protein
YP_210168.1
  • Similar to Bacteroides thetaiotaomicron putative outer membrane protein OmpH BT3723 SWALL:Q8A1E3 (EMBL:AE016941) (157 aa) fasta scores: E(): 3.6e-36, 80.89% id in 157 aa, and limited similarity to Chlorobium tepidum outer membrane protein OmpH or CT0254 SWALL:Q8KFR8 (EMBL:AE012804) (183 aa) fasta scores: E(): 0.0046, 28.65% id in 171 aa. Possible alternative start site at codon 15

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003228.3 Reference assembly

    Range
    526843..527352 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. YP_210168.1 putative outer membrane protein [Bacteroides fragilis NCTC 9343]

    Status: PROVISIONAL

Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q5LI20.1