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Ifi44l interferon-induced protein 44-like [ Rattus norvegicus (Norway rat) ]

Gene ID: 310968, updated on 2-Nov-2024

Summary

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Official Symbol
Ifi44lprovided by RGD
Official Full Name
interferon-induced protein 44-likeprovided by RGD
Primary source
RGD:1595861
See related
EnsemblRapid:ENSRNOG00000049994 AllianceGenome:RGD:1595861
Gene type
protein coding
RefSeq status
INFERRED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
H28
Summary
Predicted to be involved in immune response. Orthologous to human IFI44L (interferon induced protein 44 like). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in Thymus (RPKM 252.7), Spleen (RPKM 208.1) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Ifi44l in Genome Data Viewer
Location:
2q45
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 2 NC_086020.1 (243328629..243366404)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 2 NC_051337.1 (240668742..240706425)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 2 NC_005101.4 (256948722..256979573)

Chromosome 2 - NC_086020.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102548445 Neighboring gene interferon-induced protein 44 Neighboring gene prostaglandin F receptor Neighboring gene proteasome maturation protein pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Differences that matter: major cytotoxic T cell-stimulating minor histocompatibility antigens. Malarkannan S, et al. Immunity, 2000 Sep. PMID 11021531
  2. A diverse range of gene products are effectors of the type I interferon antiviral response. Schoggins JW, et al. Nature, 2011 Apr 28. PMID 21478870, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RGD

Process Evidence Code Pubs
involved_in defense response to virus IEA
Inferred from Electronic Annotation
more info
  
involved_in immune response IBA
Inferred from Biological aspect of Ancestor
more info
  
acts_upstream_of_or_within immune response ISO
Inferred from Sequence Orthology
more info
  

General protein information

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Preferred Names
interferon-induced protein 44-like
Names
histocompatibility 28

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001427160.1 → NP_001414089.1  interferon-induced protein 44-like

    Status: INFERRED

    Source sequence(s)
    JAXUCZ010000002
    UniProtKB/TrEMBL
    A0A8I6AEX3
    Related
    ENSRNOP00000091067.1, ENSRNOT00000113466.2

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086020.1 Reference GRCr8

    Range
    243328629..243366404
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_227820.10 → XP_227820.6  interferon-induced protein 44-like isoform X1

    UniProtKB/TrEMBL
    M0R4J5
    Related
    ENSRNOP00000064282.2, ENSRNOT00000073547.4
    Conserved Domains (1) summary
    cd00882
    Location:211 → 283
    Ras_like_GTPase; Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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