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Chd3 chromodomain helicase DNA binding protein 3 [ Rattus norvegicus (Norway rat) ]

Gene ID: 303241, updated on 28-Oct-2024

Summary

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Official Symbol
Chd3provided by RGD
Official Full Name
chromodomain helicase DNA binding protein 3provided by RGD
Primary source
RGD:1311923
See related
EnsemblRapid:ENSRNOG00000009722 AllianceGenome:RGD:1311923
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Predicted to enable several functions, including ATP hydrolysis activity; ATP-dependent chromatin remodeler activity; and histone binding activity. Predicted to be involved in chromatin remodeling; microtubule cytoskeleton organization; and negative regulation of transcription by RNA polymerase II. Predicted to act upstream of or within chromatin organization. Predicted to be located in several cellular components, including centriolar satellite; chromatin; and nuclear lumen. Predicted to be part of NuRD complex. Predicted to be active in nucleus. Biomarker of pancreatic carcinoma. Orthologous to human CHD3 (chromodomain helicase DNA binding protein 3). [provided by Alliance of Genome Resources, Oct 2024]
Expression
Biased expression in Thymus (RPKM 268.4), Brain (RPKM 189.0) and 9 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Chd3 in Genome Data Viewer
Location:
10q24
Exon count:
41
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 10 NC_086028.1 (54562437..54588842, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 10 NC_051345.1 (54063629..54090030, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 10 NC_005109.4 (55943467..55970417, complement)

Chromosome 10 - NC_086028.1Genomic Context describing neighboring genes Neighboring gene potassium voltage-gated channel subfamily A regulatory beta subunit 3 Neighboring gene ring finger protein 227 Neighboring gene small Cajal body-specific RNA 21 Neighboring gene N(alpha)-acetyltransferase 38, NatC auxiliary subunit Neighboring gene cytochrome b5 domain containing 1 Neighboring gene transmembrane protein 88

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. CHD3 helicase domain mutations cause a neurodevelopmental syndrome with macrocephaly and impaired speech and language. Snijders Blok L, et al. Nat Commun, 2018 Nov 5. PMID 30397230, Free PMC Article
  2. Proteomic analysis of pancreatic intraepithelial neoplasia and pancreatic carcinoma in rat models. Wang L, et al. World J Gastroenterol, 2011 Mar 21. PMID 21472101, Free PMC Article
  3. Rat hd mutation reveals an essential role of centrobin in spermatid head shaping and assembly of the head-tail coupling apparatus. Liska F, et al. Biol Reprod, 2009 Dec. PMID 19710508, Free PMC Article
  4. Chromatin remodeling proteins interact with pericentrin to regulate centrosome integrity. Sillibourne JE, et al. Mol Biol Cell, 2007 Sep. PMID 17626165, Free PMC Article
  5. The nucleosome remodeling and deacetylase complex in development and disease. Basta J, et al. Transl Res, 2015 Jan. PMID 24880148, Free PMC Article

See all (12) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
  
enables ATP hydrolysis activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables ATP hydrolysis activity ISO
Inferred from Sequence Orthology
more info
  
enables ATP-dependent chromatin remodeler activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables ATP-dependent chromatin remodeler activity ISO
Inferred from Sequence Orthology
more info
  
enables DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables chromatin binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables helicase activity IEA
Inferred from Electronic Annotation
more info
  
enables histone binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables transcription cis-regulatory region binding ISO
Inferred from Sequence Orthology
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
involved_in centrosome cycle ISO
Inferred from Sequence Orthology
more info
  
acts_upstream_of_or_within chromatin organization ISO
Inferred from Sequence Orthology
more info
  
involved_in chromatin remodeling IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in chromatin remodeling ISO
Inferred from Sequence Orthology
more info
  
involved_in negative regulation of transcription by RNA polymerase II ISO
Inferred from Sequence Orthology
more info
  
involved_in spindle organization ISO
Inferred from Sequence Orthology
more info
  
Component Evidence Code Pubs
part_of NuRD complex IBA
Inferred from Biological aspect of Ancestor
more info
  
part_of NuRD complex ISO
Inferred from Sequence Orthology
more info
  
located_in PML body ISO
Inferred from Sequence Orthology
more info
  
located_in centriolar satellite IEA
Inferred from Electronic Annotation
more info
  
located_in centriolar satellite ISO
Inferred from Sequence Orthology
more info
  
located_in centrosome ISO
Inferred from Sequence Orthology
more info
  
located_in chromatin IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in cytoplasm ISO
Inferred from Sequence Orthology
more info
  
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
  
located_in nucleolus ISO
Inferred from Sequence Orthology
more info
  
located_in nucleoplasm ISO
Inferred from Sequence Orthology
more info
  
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in nucleus ISO
Inferred from Sequence Orthology
more info
  

General protein information

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Preferred Names
chromodomain-helicase-DNA-binding protein 3
NP_001406850.1
XP_038943541.1
XP_038943542.1
XP_038943543.1
XP_038943544.1
XP_038943545.1
XP_038943546.1
XP_038943547.1
XP_038943548.1
XP_038943551.1
XP_038943554.1
XP_063125098.1
XP_063125099.1
XP_063125100.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001419921.1 → NP_001406850.1  chromodomain-helicase-DNA-binding protein 3

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000010
    Related
    ENSRNOP00000053890.6, ENSRNOT00000057058.6

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086028.1 Reference GRCr8

    Range
    54562437..54588842 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039087615.2 → XP_038943543.1  chromodomain-helicase-DNA-binding protein 3 isoform X3

    UniProtKB/TrEMBL
    A0A8I6GIY0
    Conserved Domains (12) summary
    PLN03142
    Location:779 → 1333
    PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
    PHA03169
    Location:1569 → 1760
    PHA03169; hypothetical protein; Provisional
    COG5034
    Location:383 → 487
    TNG2; Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
    cd15531
    Location:442 → 484
    PHD1_CHD_II; PHD finger 1 found in class II Chromodomain-Helicase-DNA binding (CHD) proteins
    cd15532
    Location:518 → 560
    PHD2_CHD_II; PHD finger 2 found in class II Chromodomain-Helicase-DNA binding (CHD) proteins
    cd18662
    Location:688 → 742
    CD2_tandem_CHD3-4_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 3 and 4, and similar proteins
    cd18667
    Location:565 → 643
    CD1_tandem_CHD3-4_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 3 and 4, and similar proteins
    cd18055
    Location:796 → 1027
    DEXHc_CHD3; DEAH-box helicase domain of the chromodomain helicase DNA binding protein 3
    pfam06461
    Location:1438 → 1577
    DUF1086; Domain of Unknown Function (DUF1086)
    pfam06465
    Location:1374 → 1417
    DUF1087; Domain of Unknown Function (DUF1087)
    pfam08073
    Location:202 → 255
    CHDNT; CHDNT (NUC034) domain
    pfam08074
    Location:1798 → 1924
    CHDCT2; CHDCT2 (NUC038) domain

  2. XM_039087617.2 → XP_038943545.1  chromodomain-helicase-DNA-binding protein 3 isoform X5

    UniProtKB/TrEMBL
    A0A8I6GIY0
    Conserved Domains (12) summary
    PLN03142
    Location:768 → 1322
    PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
    PHA03169
    Location:1558 → 1749
    PHA03169; hypothetical protein; Provisional
    COG5034
    Location:380 → 476
    TNG2; Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
    cd15531
    Location:431 → 473
    PHD1_CHD_II; PHD finger 1 found in class II Chromodomain-Helicase-DNA binding (CHD) proteins
    cd15532
    Location:507 → 549
    PHD2_CHD_II; PHD finger 2 found in class II Chromodomain-Helicase-DNA binding (CHD) proteins
    cd18662
    Location:677 → 731
    CD2_tandem_CHD3-4_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 3 and 4, and similar proteins
    cd18667
    Location:554 → 632
    CD1_tandem_CHD3-4_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 3 and 4, and similar proteins
    cd18055
    Location:785 → 1016
    DEXHc_CHD3; DEAH-box helicase domain of the chromodomain helicase DNA binding protein 3
    pfam06461
    Location:1427 → 1566
    DUF1086; Domain of Unknown Function (DUF1086)
    pfam06465
    Location:1363 → 1406
    DUF1087; Domain of Unknown Function (DUF1087)
    pfam08073
    Location:203 → 256
    CHDNT; CHDNT (NUC034) domain
    pfam08074
    Location:1787 → 1913
    CHDCT2; CHDCT2 (NUC038) domain

  3. XM_039087618.2 → XP_038943546.1  chromodomain-helicase-DNA-binding protein 3 isoform X6

    UniProtKB/TrEMBL
    A0A8I6GIY0
    Conserved Domains (12) summary
    PLN03142
    Location:780 → 1334
    PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
    PHA03169
    Location:1570 → 1721
    PHA03169; hypothetical protein; Provisional
    COG5034
    Location:384 → 488
    TNG2; Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
    cd15531
    Location:443 → 485
    PHD1_CHD_II; PHD finger 1 found in class II Chromodomain-Helicase-DNA binding (CHD) proteins
    cd15532
    Location:519 → 561
    PHD2_CHD_II; PHD finger 2 found in class II Chromodomain-Helicase-DNA binding (CHD) proteins
    cd18662
    Location:689 → 743
    CD2_tandem_CHD3-4_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 3 and 4, and similar proteins
    cd18667
    Location:566 → 644
    CD1_tandem_CHD3-4_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 3 and 4, and similar proteins
    cd18055
    Location:797 → 1028
    DEXHc_CHD3; DEAH-box helicase domain of the chromodomain helicase DNA binding protein 3
    pfam06461
    Location:1439 → 1578
    DUF1086; Domain of Unknown Function (DUF1086)
    pfam06465
    Location:1375 → 1418
    DUF1087; Domain of Unknown Function (DUF1087)
    pfam08073
    Location:203 → 256
    CHDNT; CHDNT (NUC034) domain
    pfam08074
    Location:1764 → 1890
    CHDCT2; CHDCT2 (NUC038) domain

  4. XM_039087614.2 → XP_038943542.1  chromodomain-helicase-DNA-binding protein 3 isoform X2

    UniProtKB/TrEMBL
    A0A8I6GIY0
    Conserved Domains (12) summary
    PLN03142
    Location:780 → 1334
    PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
    PHA03169
    Location:1570 → 1755
    PHA03169; hypothetical protein; Provisional
    COG5034
    Location:384 → 488
    TNG2; Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
    cd15531
    Location:443 → 485
    PHD1_CHD_II; PHD finger 1 found in class II Chromodomain-Helicase-DNA binding (CHD) proteins
    cd15532
    Location:519 → 561
    PHD2_CHD_II; PHD finger 2 found in class II Chromodomain-Helicase-DNA binding (CHD) proteins
    cd18662
    Location:689 → 743
    CD2_tandem_CHD3-4_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 3 and 4, and similar proteins
    cd18667
    Location:566 → 644
    CD1_tandem_CHD3-4_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 3 and 4, and similar proteins
    cd18055
    Location:797 → 1028
    DEXHc_CHD3; DEAH-box helicase domain of the chromodomain helicase DNA binding protein 3
    pfam06461
    Location:1439 → 1578
    DUF1086; Domain of Unknown Function (DUF1086)
    pfam06465
    Location:1375 → 1418
    DUF1087; Domain of Unknown Function (DUF1087)
    pfam08073
    Location:203 → 256
    CHDNT; CHDNT (NUC034) domain
    pfam08074
    Location:1798 → 1924
    CHDCT2; CHDCT2 (NUC038) domain

  5. XM_039087613.2 → XP_038943541.1  chromodomain-helicase-DNA-binding protein 3 isoform X1

    UniProtKB/TrEMBL
    A0A8I6GIY0
    Conserved Domains (12) summary
    PLN03142
    Location:780 → 1334
    PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
    PHA03169
    Location:1570 → 1761
    PHA03169; hypothetical protein; Provisional
    COG5034
    Location:384 → 488
    TNG2; Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
    cd15531
    Location:443 → 485
    PHD1_CHD_II; PHD finger 1 found in class II Chromodomain-Helicase-DNA binding (CHD) proteins
    cd15532
    Location:519 → 561
    PHD2_CHD_II; PHD finger 2 found in class II Chromodomain-Helicase-DNA binding (CHD) proteins
    cd18662
    Location:689 → 743
    CD2_tandem_CHD3-4_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 3 and 4, and similar proteins
    cd18667
    Location:566 → 644
    CD1_tandem_CHD3-4_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 3 and 4, and similar proteins
    cd18055
    Location:797 → 1028
    DEXHc_CHD3; DEAH-box helicase domain of the chromodomain helicase DNA binding protein 3
    pfam06461
    Location:1439 → 1578
    DUF1086; Domain of Unknown Function (DUF1086)
    pfam06465
    Location:1375 → 1418
    DUF1087; Domain of Unknown Function (DUF1087)
    pfam08073
    Location:203 → 256
    CHDNT; CHDNT (NUC034) domain
    pfam08074
    Location:1799 → 1925
    CHDCT2; CHDCT2 (NUC038) domain

  6. XM_039087626.2 → XP_038943554.1  chromodomain-helicase-DNA-binding protein 3 isoform X13

    UniProtKB/TrEMBL
    Q2KMK7
    Conserved Domains (12) summary
    PLN03142
    Location:779 → 1333
    PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
    PHA03169
    Location:1569 → 1760
    PHA03169; hypothetical protein; Provisional
    COG5034
    Location:383 → 487
    TNG2; Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
    cd15531
    Location:442 → 484
    PHD1_CHD_II; PHD finger 1 found in class II Chromodomain-Helicase-DNA binding (CHD) proteins
    cd15532
    Location:518 → 560
    PHD2_CHD_II; PHD finger 2 found in class II Chromodomain-Helicase-DNA binding (CHD) proteins
    cd18662
    Location:688 → 742
    CD2_tandem_CHD3-4_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 3 and 4, and similar proteins
    cd18667
    Location:565 → 643
    CD1_tandem_CHD3-4_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 3 and 4, and similar proteins
    cd18055
    Location:796 → 1027
    DEXHc_CHD3; DEAH-box helicase domain of the chromodomain helicase DNA binding protein 3
    pfam06461
    Location:1438 → 1577
    DUF1086; Domain of Unknown Function (DUF1086)
    pfam06465
    Location:1374 → 1417
    DUF1087; Domain of Unknown Function (DUF1087)
    pfam08073
    Location:202 → 255
    CHDNT; CHDNT (NUC034) domain
    pfam08074
    Location:1798 → 1924
    CHDCT2; CHDCT2 (NUC038) domain

  7. XM_039087616.2 → XP_038943544.1  chromodomain-helicase-DNA-binding protein 3 isoform X4

    UniProtKB/TrEMBL
    A0A8I6GIY0
    Related
    ENSRNOP00000090517.1, ENSRNOT00000114886.2
    Conserved Domains (12) summary
    PLN03142
    Location:774 → 1328
    PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
    PHA03169
    Location:1564 → 1755
    PHA03169; hypothetical protein; Provisional
    COG5034
    Location:380 → 482
    TNG2; Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
    cd15531
    Location:437 → 479
    PHD1_CHD_II; PHD finger 1 found in class II Chromodomain-Helicase-DNA binding (CHD) proteins
    cd15532
    Location:513 → 555
    PHD2_CHD_II; PHD finger 2 found in class II Chromodomain-Helicase-DNA binding (CHD) proteins
    cd18662
    Location:683 → 737
    CD2_tandem_CHD3-4_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 3 and 4, and similar proteins
    cd18667
    Location:560 → 638
    CD1_tandem_CHD3-4_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 3 and 4, and similar proteins
    cd18055
    Location:791 → 1022
    DEXHc_CHD3; DEAH-box helicase domain of the chromodomain helicase DNA binding protein 3
    pfam06461
    Location:1433 → 1572
    DUF1086; Domain of Unknown Function (DUF1086)
    pfam06465
    Location:1369 → 1412
    DUF1087; Domain of Unknown Function (DUF1087)
    pfam08073
    Location:203 → 256
    CHDNT; CHDNT (NUC034) domain
    pfam08074
    Location:1793 → 1919
    CHDCT2; CHDCT2 (NUC038) domain

  8. XM_063269029.1 → XP_063125099.1  chromodomain-helicase-DNA-binding protein 3 isoform X10

  9. XM_039087620.2 → XP_038943548.1  chromodomain-helicase-DNA-binding protein 3 isoform X8

    UniProtKB/TrEMBL
    Q2KMK7
    Conserved Domains (12) summary
    PLN03142
    Location:780 → 1334
    PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
    PHA03169
    Location:1570 → 1755
    PHA03169; hypothetical protein; Provisional
    COG5034
    Location:384 → 488
    TNG2; Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
    cd15531
    Location:443 → 485
    PHD1_CHD_II; PHD finger 1 found in class II Chromodomain-Helicase-DNA binding (CHD) proteins
    cd15532
    Location:519 → 561
    PHD2_CHD_II; PHD finger 2 found in class II Chromodomain-Helicase-DNA binding (CHD) proteins
    cd18662
    Location:689 → 743
    CD2_tandem_CHD3-4_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 3 and 4, and similar proteins
    cd18667
    Location:566 → 644
    CD1_tandem_CHD3-4_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 3 and 4, and similar proteins
    cd18055
    Location:797 → 1028
    DEXHc_CHD3; DEAH-box helicase domain of the chromodomain helicase DNA binding protein 3
    pfam06461
    Location:1439 → 1578
    DUF1086; Domain of Unknown Function (DUF1086)
    pfam06465
    Location:1375 → 1418
    DUF1087; Domain of Unknown Function (DUF1087)
    pfam08073
    Location:203 → 256
    CHDNT; CHDNT (NUC034) domain
    pfam08074
    Location:1798 → 1924
    CHDCT2; CHDCT2 (NUC038) domain

  10. XM_039087619.2 → XP_038943547.1  chromodomain-helicase-DNA-binding protein 3 isoform X7

    UniProtKB/TrEMBL
    Q2KMK7
    Conserved Domains (12) summary
    PLN03142
    Location:780 → 1334
    PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
    PHA03169
    Location:1570 → 1761
    PHA03169; hypothetical protein; Provisional
    COG5034
    Location:384 → 488
    TNG2; Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
    cd15531
    Location:443 → 485
    PHD1_CHD_II; PHD finger 1 found in class II Chromodomain-Helicase-DNA binding (CHD) proteins
    cd15532
    Location:519 → 561
    PHD2_CHD_II; PHD finger 2 found in class II Chromodomain-Helicase-DNA binding (CHD) proteins
    cd18662
    Location:689 → 743
    CD2_tandem_CHD3-4_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 3 and 4, and similar proteins
    cd18667
    Location:566 → 644
    CD1_tandem_CHD3-4_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 3 and 4, and similar proteins
    cd18055
    Location:797 → 1028
    DEXHc_CHD3; DEAH-box helicase domain of the chromodomain helicase DNA binding protein 3
    pfam06461
    Location:1439 → 1578
    DUF1086; Domain of Unknown Function (DUF1086)
    pfam06465
    Location:1375 → 1418
    DUF1087; Domain of Unknown Function (DUF1087)
    pfam08073
    Location:203 → 256
    CHDNT; CHDNT (NUC034) domain
    pfam08074
    Location:1799 → 1925
    CHDCT2; CHDCT2 (NUC038) domain

  11. XM_039087623.2 → XP_038943551.1  chromodomain-helicase-DNA-binding protein 3 isoform X11

    UniProtKB/TrEMBL
    A0A8I6AF31, Q2KMK9
    Related
    ENSRNOP00000091170.1, ENSRNOT00000099449.2
    Conserved Domains (12) summary
    PLN03142
    Location:774 → 1328
    PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
    PHA03169
    Location:1564 → 1715
    PHA03169; hypothetical protein; Provisional
    COG5034
    Location:380 → 482
    TNG2; Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
    cd15531
    Location:437 → 479
    PHD1_CHD_II; PHD finger 1 found in class II Chromodomain-Helicase-DNA binding (CHD) proteins
    cd15532
    Location:513 → 555
    PHD2_CHD_II; PHD finger 2 found in class II Chromodomain-Helicase-DNA binding (CHD) proteins
    cd18662
    Location:683 → 737
    CD2_tandem_CHD3-4_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 3 and 4, and similar proteins
    cd18667
    Location:560 → 638
    CD1_tandem_CHD3-4_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 3 and 4, and similar proteins
    cd18055
    Location:791 → 1022
    DEXHc_CHD3; DEAH-box helicase domain of the chromodomain helicase DNA binding protein 3
    pfam06461
    Location:1433 → 1572
    DUF1086; Domain of Unknown Function (DUF1086)
    pfam06465
    Location:1369 → 1412
    DUF1087; Domain of Unknown Function (DUF1087)
    pfam08073
    Location:203 → 256
    CHDNT; CHDNT (NUC034) domain
    pfam08074
    Location:1758 → 1884
    CHDCT2; CHDCT2 (NUC038) domain

  12. XM_063269028.1 → XP_063125098.1  chromodomain-helicase-DNA-binding protein 3 isoform X9

  13. XM_063269030.1 → XP_063125100.1  chromodomain-helicase-DNA-binding protein 3 isoform X12

Nucleotide Protein Strain
Heading Accession and Version

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