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Npsr1 neuropeptide S receptor 1 [ Rattus norvegicus (Norway rat) ]

Gene ID: 300458, updated on 2-Nov-2024

Summary

Official Symbol
Npsr1provided by RGD
Official Full Name
neuropeptide S receptor 1provided by RGD
Primary source
RGD:1564154
See related
EnsemblRapid:ENSRNOG00000015863 AllianceGenome:RGD:1564154
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1564154
Summary
Predicted to enable neuropeptide receptor activity. Involved in several processes, including negative regulation of defecation; positive regulation of ERK1 and ERK2 cascade; and righting reflex. Predicted to be located in cytoplasm. Predicted to be active in plasma membrane. Biomarker of morphine dependence. Human ortholog(s) of this gene implicated in asthma; inflammatory bowel disease; newborn respiratory distress syndrome; and rheumatoid arthritis. Orthologous to human NPSR1 (neuropeptide S receptor 1). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in Brain (RPKM 2.4), Testes (RPKM 0.7) and 2 other tissues See more
Orthologs
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Genomic context

See Npsr1 in Genome Data Viewer
Location:
8q13
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 8 NC_086026.1 (30882830..31107425)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 8 NC_051343.1 (22606946..22831558)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 8 NC_005107.4 (25246174..25483582)

Chromosome 8 - NC_086026.1Genomic Context describing neighboring genes Neighboring gene keratin 18, pseudogene 2 Neighboring gene crumbs cell polarity complex component 1, pseudogene 2 Neighboring gene S100 calcium binding protein A11, pseudogene 5 Neighboring gene small nucleolar RNA SNORA17 Neighboring gene dpy-19 like C-mannosyltransferase 1

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

General gene information

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables neuropeptide receptor activity IBA
Inferred from Biological aspect of Ancestor
more info
 
enables neuropeptide receptor activity IEA
Inferred from Electronic Annotation
more info
 
enables neuropeptide receptor activity ISO
Inferred from Sequence Orthology
more info
 
enables neuropeptide receptor activity ISS
Inferred from Sequence or Structural Similarity
more info
 
enables vasopressin receptor activity IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in cytoplasm ISO
Inferred from Sequence Orthology
more info
 
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 
located_in plasma membrane ISO
Inferred from Sequence Orthology
more info
 
located_in plasma membrane ISS
Inferred from Sequence or Structural Similarity
more info
 

General protein information

Preferred Names
neuropeptide S receptor
Names
G-protein coupled receptor 154

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001106808.1NP_001100278.1  neuropeptide S receptor

    See identical proteins and their annotated locations for NP_001100278.1

    Status: PROVISIONAL

    Source sequence(s)
    CH474007
    UniProtKB/Swiss-Prot
    P0C0L6
    UniProtKB/TrEMBL
    A0A0H2UHN0, A6JYA3
    Related
    ENSRNOP00000021625.7, ENSRNOT00000021625.8
    Conserved Domains (1) summary
    pfam00001
    Location:66330
    7tm_1; 7 transmembrane receptor (rhodopsin family)

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086026.1 Reference GRCr8

    Range
    30882830..31107425
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)