U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Fbxo46 F-box protein 46 [ Rattus norvegicus (Norway rat) ]

Gene ID: 292686, updated on 17-Aug-2024

Summary

Go to the top of the page Help
Official Symbol
Fbxo46provided by RGD
Official Full Name
F-box protein 46provided by RGD
Primary source
RGD:1308393
See related
EnsemblRapid:ENSRNOG00000008815 AllianceGenome:RGD:1308393
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Orthologous to human FBXO46 (F-box protein 46). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in Thymus (RPKM 45.7), Testes (RPKM 44.5) and 9 other tissues See more
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See Fbxo46 in Genome Data Viewer
Location:
1q21
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 1 NC_086019.1 (87898029..87914615)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 1 NC_051336.1 (78770059..78786582)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (80028873..80045666)

Chromosome 1 - NC_086019.1Genomic Context describing neighboring genes Neighboring gene DM1 protein kinase Neighboring gene SIX homeobox 5 Neighboring gene meiosis initiator Neighboring gene glutaminyl-peptide cyclotransferase-like Neighboring gene small nuclear ribonucleoprotein D2 polypeptide

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). Gerhard DS, et al. Genome Res, 2004 Oct. PMID 15489334, Free PMC Article
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Markers

Homology

Clone Names

  • MGC114545

General protein information

Go to the top of the page Help
Preferred Names
F-box only protein 46

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001025642.1 → NP_001020813.1  F-box only protein 46

    See identical proteins and their annotated locations for NP_001020813.1

    Status: PROVISIONAL

    Source sequence(s)
    BC098945
    UniProtKB/Swiss-Prot
    Q4KLY2
    UniProtKB/TrEMBL
    A6J8J9
    Related
    ENSRNOP00000104882.1, ENSRNOT00000122695.1
    Conserved Domains (1) summary
    pfam12937
    Location:473 → 507
    F-box-like

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086019.1 Reference GRCr8

    Range
    87898029..87914615
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006228399.5 → XP_006228461.1  F-box only protein 46 isoform X1

    See identical proteins and their annotated locations for XP_006228461.1

    UniProtKB/Swiss-Prot
    Q4KLY2
    UniProtKB/TrEMBL
    A6J8J9
    Related
    ENSRNOP00000103398.1, ENSRNOT00000139630.1
    Conserved Domains (1) summary
    pfam12937
    Location:473 → 507
    F-box-like

  2. XM_039103955.2 → XP_038959883.1  F-box only protein 46 isoform X1

    UniProtKB/Swiss-Prot
    Q4KLY2
    UniProtKB/TrEMBL
    A6J8J9
    Related
    ENSRNOP00000104645.1, ENSRNOT00000155506.1
    Conserved Domains (1) summary
    pfam12937
    Location:473 → 507
    F-box-like

  3. XM_039103964.2 → XP_038959892.1  F-box only protein 46 isoform X1

    UniProtKB/Swiss-Prot
    Q4KLY2
    UniProtKB/TrEMBL
    A6J8J9
    Related
    ENSRNOP00000112051.1, ENSRNOT00000171860.1
    Conserved Domains (1) summary
    pfam12937
    Location:473 → 507
    F-box-like

  4. XM_006228400.5 → XP_006228462.1  F-box only protein 46 isoform X1

    See identical proteins and their annotated locations for XP_006228462.1

    UniProtKB/Swiss-Prot
    Q4KLY2
    UniProtKB/TrEMBL
    A6J8J9
    Related
    ENSRNOP00000099991.1, ENSRNOT00000162291.1
    Conserved Domains (1) summary
    pfam12937
    Location:473 → 507
    F-box-like

  5. XM_006228401.5 → XP_006228463.1  F-box only protein 46 isoform X1

    See identical proteins and their annotated locations for XP_006228463.1

    UniProtKB/Swiss-Prot
    Q4KLY2
    UniProtKB/TrEMBL
    A6J8J9
    Related
    ENSRNOP00000097011.1, ENSRNOT00000119270.2
    Conserved Domains (1) summary
    pfam12937
    Location:473 → 507
    F-box-like
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q4KLY2.1 GenPept UniProtKB/Swiss-Prot:Q4KLY2

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Chemical Information
Molecular Biology Databases
Research Materials
Tools