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MMP_RS05800 radical SAM protein [ Methanococcus maripaludis S2 ]

Gene ID: 2761896, updated on 29-Sep-2023

Summary

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Gene symbol
MMP_RS05800
Gene description
radical SAM protein
Locus tag
MMP_RS05800
Gene type
protein coding
Organism
Methanococcus maripaludis S2 (strain: S2)
Lineage
Archaea; Euryarchaeota; Methanomada group; Methanococci; Methanococcales; Methanococcaceae; Methanococcus
Old locus tag
MMP1123
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Genomic context

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Sequence:
NC_005791.1 (1112909..1114225, complement)

NC_005791.1Genomic Context describing neighboring genes Neighboring gene HDIG domain-containing metalloprotein Neighboring gene redox-regulated ATPase YchF Neighboring gene thiamine-phosphate kinase Neighboring gene archaeosortase family protein ArtE

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_005791.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Complete genome sequence of the genetically tractable hydrogenotrophic methanogen Methanococcus maripaludis. Hendrickson EL, et al. J Bacteriol, 2004 Oct. PMID 15466049, Free PMC Article
  2. Self-sacrifice in radical S-adenosylmethionine proteins. Booker SJ, et al. Curr Opin Chem Biol, 2007 Oct. PMID 17936058, Free PMC Article
  3. The Radical SAM Superfamily. Frey PA, et al. Crit Rev Biochem Mol Biol, 2008 Jan-Feb. PMID 18307109
  4. Radical SAM, a novel protein superfamily linking unresolved steps in familiar biosynthetic pathways with radical mechanisms: functional characterization using new analysis and information visualization methods. Sofia HJ, et al. Nucleic Acids Res, 2001 Mar 1. PMID 11222759, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
radical SAM protein

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_005791.1 Reference assembly

    Range
    1112909..1114225 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. WP_011171067.1 radical SAM protein [Methanococcus maripaludis]

    See identical proteins and their annotated locations for WP_011171067.1

    UniProtKB/TrEMBL
    A9AAI3, Q6LY68
    Conserved Domains (3) summary
    cd01335
    Location:171 → 372
    Radical_SAM; Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. ...
    smart00729
    Location:170 → 371
    Elp3; Elongator protein 3, MiaB family, Radical SAM
    cl00293
    Location:43 → 129
    B12-binding_like; B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, ...
Nucleotide Protein
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