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MMP_RS05620 radical SAM/SPASM domain-containing protein [ Methanococcus maripaludis S2 ]

Gene ID: 2761681, updated on 29-Sep-2023

Summary

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Gene symbol
MMP_RS05620
Gene description
radical SAM/SPASM domain-containing protein
Locus tag
MMP_RS05620
Gene type
protein coding
Organism
Methanococcus maripaludis S2 (strain: S2)
Lineage
Archaea; Euryarchaeota; Methanomada group; Methanococci; Methanococcales; Methanococcaceae; Methanococcus
Old locus tag
MMP1087
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Genomic context

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Sequence:
NC_005791.1 (1078474..1079520, complement)

NC_005791.1Genomic Context describing neighboring genes Neighboring gene archaellin sugar biosynthesis methyltransferase AglV Neighboring gene radical SAM/SPASM domain-containing protein Neighboring gene glycosyltransferase Neighboring gene flippase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_005791.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. SPASM and twitch domains in S-adenosylmethionine (SAM) radical enzymes. Grell TA, et al. J Biol Chem, 2015 Feb 13. PMID 25477505, Free PMC Article
  2. Complete genome sequence of the genetically tractable hydrogenotrophic methanogen Methanococcus maripaludis. Hendrickson EL, et al. J Bacteriol, 2004 Oct. PMID 15466049, Free PMC Article
  3. Self-sacrifice in radical S-adenosylmethionine proteins. Booker SJ, et al. Curr Opin Chem Biol, 2007 Oct. PMID 17936058, Free PMC Article
  4. The Radical SAM Superfamily. Frey PA, et al. Crit Rev Biochem Mol Biol, 2008 Jan-Feb. PMID 18307109
  5. Radical SAM, a novel protein superfamily linking unresolved steps in familiar biosynthetic pathways with radical mechanisms: functional characterization using new analysis and information visualization methods. Sofia HJ, et al. Nucleic Acids Res, 2001 Mar 1. PMID 11222759, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
radical SAM/SPASM domain-containing protein

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_005791.1 Reference assembly

    Range
    1078474..1079520 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. WP_011171031.1 radical SAM/SPASM domain-containing protein [Methanococcus maripaludis]

    See identical proteins and their annotated locations for WP_011171031.1

    UniProtKB/TrEMBL
    A0A7J9PS52, Q6LYA4
    Conserved Domains (3) summary
    cd01335
    Location:33 → 207
    Radical_SAM; Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. ...
    pfam04055
    Location:35 → 193
    Radical_SAM; Radical SAM superfamily
    pfam13186
    Location:241 → 306
    SPASM; Iron-sulfur cluster-binding domain
Nucleotide Protein
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